source: cpp/frams/genetics

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Diff Rev Age Author Log Message
(edit) @752   2 years Maciej Komosinski Mutation in the 'fn' encoding respects custom min,max,stddev for each …
(edit) @751   2 years Maciej Komosinski More versatile mutation function for numbers
(edit) @750   2 years Maciej Komosinski More proper definition of the crossover parameter
(edit) @749   2 years Maciej Komosinski Added a new function to linearly mix two vectors of real numbers
(edit) @748   2 years Maciej Komosinski Configured and activated the new "fn" genetic representation
(edit) @747   2 years Maciej Komosinski Added a new "fn" genetic representation (a vector of real numbers for …
(edit) @743   2 years Maciej Komosinski Introduced different function names in C++ instead of overloading …
(edit) @740   2 years Maciej Komosinski Added support for developmental phases ("checkpoints") to converters …
(edit) @736   2 years Maciej Komosinski Added the new "using_checkpoints" argument to genetic converters so …
(edit) @735   2 years Maciej Komosinski Base genotype converter is now abstract, which triggers compilation …
(edit) @732   2 years Maciej Komosinski Added support for "checkpoints" (intermediate phases of development of …
(edit) @726   2 years Maciej Komosinski - Changed Model::singleStepBuild() to Model::addFromString() to create …
(edit) @720   2 years Maciej Komosinski Param::save2() renamed to saveSingleLine(); unified Param::load() so …
(edit) @719   2 years Maciej Komosinski f1->f0 mapping maps ',' and ')' symbols to the branching Part (earlier …
(edit) @716   3 years Maciej Komosinski The f1 converter is now able to map more than one genotype character …
(edit) @715   3 years Maciej Komosinski GenMan?'s constructor now calls its setDefaults() to initialize all …
(edit) @714   3 years Maciej Komosinski - Setting default NeuroClass? active/genactive in preconfigured …
(edit) @676   3 years Maciej Komosinski Improved comments, removed unnecessary TODO regarding "Rr" modifiers
(edit) @675   3 years Maciej Komosinski Code formatting
(edit) @674   3 years Maciej Komosinski f4 modifiers implemented similarly to f1 modifiers, and a base for …
(edit) @673   3 years Maciej Komosinski Added three functions that may be useful in general
(edit) @672   3 years Maciej Komosinski More appropriate name for the "model_energy_max" variable
(edit) @671   3 years Maciej Komosinski Unified property names of f1 and f4; improved docs; 3.141 -> M_PI
(edit) @670   3 years Maciej Komosinski Improved variable names and docs
(edit) @669   3 years Maciej Komosinski As default foraminifera initial chamber radius in Framsticks units …
(edit) @668   3 years Maciej Komosinski Fixed argument type in GenMan?.getSimplest()
(edit) @667   3 years Maciej Komosinski - fF foraminifera encoding supports scaling (radius) of the initial …
(edit) @664   3 years Maciej Komosinski Mark last Part white - a visual aid for easier editing of f9 genotypes
(edit) @643   3 years Maciej Komosinski The meaning of f9 3D-direction genes made consistent with Framsticks …
(edit) @551   4 years Maciej Komosinski PreconfiguredGenetics? warns about unexpected use case and unregisters …
(edit) @544   4 years Maciej Komosinski Renamed: Model::getShape() ==> Model::getShapeType() Model::SHAPE_OLD …
(edit) @534   4 years Maciej Komosinski Renamed: get/setGene -> get/setGenes, setGeneOnly -> …
(edit) @532   4 years Maciej Komosinski A new set of getStyle/getFullStyle functions in GenMan? and cosmetic …
(edit) @530   4 years Maciej Komosinski Strict parsing of genotype format prefix
(edit) @528   4 years Maciej Komosinski - Part.m removed - Part.h becomes XPROP - validate more part and joint …
(edit) @522   4 years Maciej Komosinski Code formatting
(edit) @521   4 years Maciej Komosinski Extended error messages for invalid genotype format declaration
(edit) @518   4 years Maciej Komosinski More strict parsing of genotype format prefix
(edit) @516   4 years Maciej Komosinski Geno format as a string (no longer ascii number)
(edit) @514   4 years Maciej Komosinski More strict parsing of numbers when converting genotypes f1->f0
(edit) @513   4 years Maciej Komosinski checkValidity() and validate() are now aware of genotype name
(edit) @508   4 years Maciej Komosinski Conditional macro to identify for which genotypes the order of …
(edit) @500   4 years Maciej Komosinski Fixed uninit - previously cached f0 might have been treated as invalid
(edit) @494   4 years Maciej Komosinski Empty destructor no longer needed since it is present in the base …
(edit) @492   4 years Maciej Komosinski emscripten compatibility
(edit) @483   4 years Maciej Komosinski Unified DEBUG macro ( -> _DEBUG )
(edit) @467   4 years Maciej Komosinski GenMan? interface uses STL std::string instead of SString
(edit) @452   5 years Maciej Komosinski Validation of genotypes additionally prints genotype name when there …
(edit) @408   5 years Maciej Komosinski Typos
(edit) @391   5 years sz Moved frams/loggers to common/loggers
(edit) @375   5 years Maciej Komosinski Renamed logging functions to more intuitive and simple names
(edit) @372   5 years sz Renamed some classes and functions to make their purpose more obvious: …
(edit) @348   5 years Maciej Komosinski - explicit c_str() in SString instead of (const char*) cast - genetic …
(edit) @346   5 years Maciej Komosinski Each thread can use its own simulator's GenMan?
(edit) @344   5 years Maciej Komosinski Non-COW string compatibility (const char* is always invalid after …
(edit) @319   5 years Maciej Komosinski Fixed compilation warnings
(edit) @288   5 years Maciej Komosinski GDK->SDK, gdk_test.cpp -> genomanipulation.cpp
(edit) @287   5 years Maciej Komosinski GDK->SDK
(edit) @286   5 years Maciej Komosinski Updated headers
(edit) @280   5 years Maciej Komosinski Version 4.0
(edit) @275   5 years Maciej Komosinski Inheritance information during crossing over properly stored as a …
(edit) @271   5 years Maciej Komosinski Refreshed header comments
(edit) @259   5 years Maciej Komosinski Added support for genetic mapping in f9
(edit) @257   5 years Maciej Komosinski - added strmove(): strcpy() for overlapping strings - ExtObject?
(edit) @256   6 years Maciej Komosinski Chambers in Foraminifera now have the proper orientation in 3D; …
(edit) @247   6 years Maciej Komosinski Sources support both 32-bit and 64-bit, and more compilers
(edit) @240   6 years Maciej Komosinski Used | instead of + when adding binary flags
(edit) @228   6 years Maciej Komosinski More warnings for illegal ExtValue? operations: object+-*/%something …
(edit) @201   6 years Maciej Komosinski Moved isAbsolutePath() to another source file and added implementation …
(edit) @200   6 years Maciej Komosinski More stl string, less SString
(edit) @199   6 years Maciej Komosinski Avoid const char*/char* compilation warnings
(edit) @197   6 years Maciej Komosinski GDK used by developers since 1999, distributed on the web since 2002
(edit) @196   6 years Maciej Komosinski Updated f4 sources and made f4 available for GDK demo apps
(edit) @194   6 years Maciej Komosinski Updated sources of the fT (ATGC sequences) genetic operators - useful …
(edit) @187   6 years sz all text files should have svn:eol-style=native
(edit) @185   6 years Maciej Komosinski Avoid "atan2: domain error"
(edit) @181   6 years Maciej Komosinski Cosmetic change in order
(edit) @180   6 years Maciej Komosinski Remove fixed length buffers
(edit) @178   6 years Maciej Komosinski Changed cryptic double[4] into a meaningful struct
(edit) @177   6 years Maciej Komosinski Optimizations and simplifications
(edit) @176   6 years Maciej Komosinski Renamed #defines that conflicted with system-wide defines for Windows …
(edit) @174   6 years oriona Chambers in Foraminifera grow so that the length of the local …
(edit) @170   6 years sz removed the confusing SList operator!()
(edit) @168   6 years sz reformatting
(edit) @158   6 years sz genetics: warn if properties cannot be mixed because of incompatible types
(edit) @157   6 years sz f9 and Ff converters can now detect an invalid input genotype and …
(edit) @151   6 years sz (c) header added
(edit) @150   6 years sz Warn against missing converter, convert() caller can differentiate …
(edit) @146   6 years sz oops, forgot to include oper_fx.cpp in the previous Genetics update
(edit) @145   6 years sz Genetics reorganization (affects ALL applications!): - …
(edit) @140   6 years sz introducing the Foraminifera encoding (format 'F')
(edit) @139   6 years sz class renaming + minor corrections
(edit) @138   6 years sz genetic operator example - frams/_demos/genooper_test.cpp
(edit) @126   6 years sz minor corrections
(edit) @125   6 years sz f9: APPLY_DETERMINISTIC_BODY_NOISE enabled by default
(edit) @121   6 years sz updated file headers and makefiles
(edit) @120   6 years Maciej Komosinski added sources of the f9->f0 genetic converter
(copy) @119   6 years Maciej Komosinski reorganization of genetic sources (makefiles not updated yet)
copied from cpp/frams/genetic:
(add) @109   6 years sz source reorganization (see README) new feature added: part/joint …
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