source: mds-and-trees

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Diff Rev Age Author Log Message
(edit) @713   3 years Maciej Komosinski Made error message more specific
(edit) @712   3 years Maciej Komosinski Improved status and error messages
(edit) @711   3 years konrad Logs without [BORN] entries (only [OFFSPRING]) should load properly now
(edit) @710   3 years konrad Added multi-input-file support (eg. ./tree-genealogy.py -i file1.out …
(edit) @709   3 years konrad tree-genealogy.py should now work correctly with the order of events …
(edit) @708   3 years Maciej Komosinski Improved diagnostic message
(edit) @707   3 years konrad Added a warning message about merging nodes with a virtual parent node.
(edit) @706   3 years konrad No more svn ignore on mds-and-trees
(edit) @705   3 years konrad Added an example of configuration file with colormaps
(edit) @702   3 years konrad Non-normalized step values for cmap can now extend outside the range …
(edit) @701   3 years konrad Fixed a bug that could occur for trees with a lot of crossover …
(edit) @700   3 years konrad Colors support matplotlib cmaps now. 'color' property in config file …
(edit) @697   3 years Maciej Komosinski More legible and consistent notation of ranges
(edit) @696   3 years konrad Changes to formating of min/max values of properties
(edit) @695   3 years konrad Using matplotlib's color package to interpret colors. Color can be now …
(edit) @694   3 years konrad Some improvements in behavior for big trees
(edit) @690   3 years konrad Better (but not ideal) behavior for very big trees
(edit) @689   3 years Maciej Komosinski More informative message
(edit) @688   3 years Maciej Komosinski More informative message
(edit) @687   3 years konrad Using "inherited' to decide horizontal distance from the parent
(edit) @686   3 years Maciej Komosinski Made loop iteration variable implicit ("enumerate")
(edit) @685   3 years Maciej Komosinski Displays progress as convenient percentage
(edit) @684   3 years Maciej Komosinski Minor optimization
(edit) @683   3 years Maciej Komosinski Slightly more helpful error message
(edit) @682   3 years konrad Broken last lines in input logs will not crash the script anymore (the …
(edit) @681   3 years konrad Improved the compute_depth function so now it works much faster for …
(edit) @680   3 years konrad Fixed the "ValueError?: max() arg is an empty sequence" error occurring …
(edit) @679   3 years konrad compute_adepth no longer uses recursion (so it should work better …
(edit) @678   3 years konrad Fixed a bug attempting to normalize a list of lists
(edit) @677   3 years konrad Fixed a bug with an incorrect order of assigning placement to nodes
(edit) @633   4 years konrad Added measure of progress (based on regression of time-distances …
(edit) @628   4 years konrad Fixed printing texts in svg and added support for additional …
(edit) @627   4 years konrad tree-genealogy.py is now supporting multiple virtual parents (they are …
(edit) @626   4 years konrad Added multisampling (antialiasing) option for raster output
(edit) @625   4 years konrad Font for tree-genealogy.py
(edit) @624   4 years konrad New, faster, more flexible and refactored version of the …
(edit) @623   4 years konrad Some minor changes
(edit) @622   4 years konrad Added an option to restrict the tree to first X nodes.
(edit) @621   4 years konrad Rewritten prepos_children to the iterative form + Turned on some debugging
(edit) @620   4 years konrad The parameters should not be case specific anymore, also added some …
(edit) @619   4 years konrad Changed spine and skeleton drawing methods from recurrent to iterative …
(edit) @618   4 years konrad Removed the recurrent version of the tree-drawing method, fixed and …
(edit) @617   4 years konrad Added non-recurrent verion of tree drawing function, …
(edit) @616   4 years Maciej Komosinski Introduced an option to swap (exchange) X and Y axes
(edit) @615   4 years Maciej Komosinski Improved descriptions
(edit) @614   4 years Maciej Komosinski Fixed typos
(edit) @613   4 years Maciej Komosinski Introduced options to flip (invert, negate) X and/or Y axes
(edit) @609   4 years Maciej Komosinski Labels can have colors dependent on label text
(edit) @608   4 years Maciej Komosinski Displays the fraction of variance preserved after MDS
(edit) @607   4 years Maciej Komosinski Updated for new format of dissimilarity matrix (with the optional two …
(edit) @604   4 years Maciej Komosinski Made the amount of jitter a continuous, adjustable parameter
(edit) @603   4 years oriona Integer command line arguments converted to ints in main call.
(edit) @602   4 years Maciej Komosinski - More flexible reading of distance matrices from files - Can also …
(edit) @600   4 years oriona Number of returned dimensions set to minimum of desired number and the …
(edit) @599   4 years oriona Function for computing variances removed.
(edit) @598   4 years oriona MDS algorithm changed to cmdscale. Coordinates export to file added.
(edit) @597   4 years Maciej Komosinski No longer ignores "jitter" and "outname" parameters
(edit) @596   4 years Maciej Komosinski Uncomment to make it work with no graphical backend
(edit) @594   4 years konrad Fixed drawing the spine and the skeleton for the tree-genealogy.py
(edit) @589   4 years konrad Fixed dark lines inside lines in tree-genealogy.py
(edit) @586   4 years konrad Tiny refactoring of tree-genealogy.py
(edit) @585   4 years konrad Added an option for defining colors of crossover / mutation lines from …
(edit) @577   4 years konrad Supporting coloring edges and nodes by type, scalable dots
(edit) @576   4 years konrad Simple scale
(edit) @572   4 years konrad Added crossover and support for Inheritance table (but the table …
(edit) @571   4 years konrad Additional options in tree-genealogy.py, dots and jitter
(edit) @566   4 years konrad Added REAL time option for tree-genealogy.py, renamed previous REAL …
(edit) @565   4 years oriona Script for plotting results of the MDS added.
(edit) @564   4 years konrad some changes to drawing style + non-random dissimilarity + assertion
(edit) @563   4 years konrad updated to the new input format
(add) @562   4 years Maciej Komosinski Added a script to draw genealogical trees based on parent-child …
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