

@679

3 years 
konrad 
compute_adepth no longer uses recursion (so it should work better …



@678

3 years 
konrad 
Fixed a bug attempting to normalize a list of lists



@677

3 years 
konrad 
Fixed a bug with an incorrect order of assigning placement to nodes



@633

4 years 
konrad 
Added measure of progress (based on regression of timedistances …



@628

4 years 
konrad 
Fixed printing texts in svg and added support for additional …



@627

4 years 
konrad 
treegenealogy.py is now supporting multiple virtual parents (they are …



@626

4 years 
konrad 
Added multisampling (antialiasing) option for raster output



@625

4 years 
konrad 
Font for treegenealogy.py



@624

4 years 
konrad 
New, faster, more flexible and refactored version of the …



@623

4 years 
konrad 
Some minor changes



@622

4 years 
konrad 
Added an option to restrict the tree to first X nodes.



@621

4 years 
konrad 
Rewritten prepos_children to the iterative form + Turned on some debugging



@620

4 years 
konrad 
The parameters should not be case specific anymore, also added some …



@619

4 years 
konrad 
Changed spine and skeleton drawing methods from recurrent to iterative …



@618

4 years 
konrad 
Removed the recurrent version of the treedrawing method, fixed and …



@617

4 years 
konrad 
Added nonrecurrent verion of tree drawing function, …



@616

4 years 
Maciej Komosinski 
Introduced an option to swap (exchange) X and Y axes



@615

4 years 
Maciej Komosinski 
Improved descriptions



@614

4 years 
Maciej Komosinski 
Fixed typos



@613

4 years 
Maciej Komosinski 
Introduced options to flip (invert, negate) X and/or Y axes



@609

4 years 
Maciej Komosinski 
Labels can have colors dependent on label text



@608

4 years 
Maciej Komosinski 
Displays the fraction of variance preserved after MDS



@607

4 years 
Maciej Komosinski 
Updated for new format of dissimilarity matrix (with the optional two …



@604

4 years 
Maciej Komosinski 
Made the amount of jitter a continuous, adjustable parameter



@603

4 years 
oriona 
Integer command line arguments converted to ints in main call.



@602

4 years 
Maciej Komosinski 
 More flexible reading of distance matrices from files
 Can also …



@600

4 years 
oriona 
Number of returned dimensions set to minimum of desired number and the …



@599

4 years 
oriona 
Function for computing variances removed.



@598

4 years 
oriona 
MDS algorithm changed to cmdscale. Coordinates export to file added.



@597

4 years 
Maciej Komosinski 
No longer ignores "jitter" and "outname" parameters



@596

4 years 
Maciej Komosinski 
Uncomment to make it work with no graphical backend



@594

4 years 
konrad 
Fixed drawing the spine and the skeleton for the treegenealogy.py



@589

4 years 
konrad 
Fixed dark lines inside lines in treegenealogy.py



@586

4 years 
konrad 
Tiny refactoring of treegenealogy.py



@585

4 years 
konrad 
Added an option for defining colors of crossover / mutation lines from …



@577

4 years 
konrad 
Supporting coloring edges and nodes by type, scalable dots



@576

4 years 
konrad 
Simple scale



@572

4 years 
konrad 
Added crossover and support for Inheritance table (but the table …



@571

4 years 
konrad 
Additional options in treegenealogy.py, dots and jitter



@566

4 years 
konrad 
Added REAL time option for treegenealogy.py, renamed previous REAL …



@565

4 years 
oriona 
Script for plotting results of the MDS added.



@564

4 years 
konrad 
some changes to drawing style + nonrandom dissimilarity + assertion



@563

4 years 
konrad 
updated to the new input format



@562

4 years 
Maciej Komosinski 
Added a script to draw genealogical trees based on parentchild …
