Changeset 732 for cpp/frams/_demos/genoconv_test.cpp

Timestamp:

02/15/18 00:42:07 (6 years ago)

Author:

Maciej Komosinski

Message:

Added support for "checkpoints" (intermediate phases of development of the Model when converting between genetic encodings). See Model.checkpoint() and conv_f1.cpp for an example.

File:

• cpp/frams/_demos/genoconv_test.cpp (modified) (7 diffs)

cpp/frams/_demos/genoconv_test.cpp

@@ -27 +27 @@
                 in_format = 'x';
         }
-        SString convert(SString &i, MultiMap *map) { return SString("after conversion..."); }
+        SString convert(SString &i, MultiMap *map, bool using_checkpoints) { return SString("after conversion..."); }
         ~GenoConv_Test() {}
 };
@@ -42 +42 @@
         }
 
-        SString convert(SString &i, MultiMap *map)
+        SString convert(SString &i, MultiMap *map, bool using_checkpoints)
         {
                 Model mod;
@@ -53 +53 @@
                 return mod.getF0Geno().getGenes();
         }
-        
+
         ~GenoConv_Test2() {}
 };
@@ -70 +70 @@
                 mapsupport = 1;
         }
-        SString convert(SString &in, MultiMap *map);
+        SString convert(SString &in, MultiMap *map, bool using_checkpoints);
         ~GenoConv_Test3() {}
 };
 
 /** main converting routine - most important: direct conversion map example */
-SString GenoConv_Test3::convert(SString &in, MultiMap *map)
+SString GenoConv_Test3::convert(SString &in, MultiMap *map, bool using_checkpoints)
 {
         SString dst;
@@ -116 +116 @@
 }
 
+// arguments:
+//     genotype (or - meaning "read from stdin") [default: X]
+//     target format [default: 0]
+//     "checkpoints" (just write this exact word) [default: not using checkpoints]
 int main(int argc, char *argv[])
 {
@@ -146 +150 @@
                 src = "X";
         char dst = (argc > 2) ? *argv[2] : '0';
+        bool using_checkpoints = (argc > 3) ? (strcmp(argv[3], "checkpoints") == 0) : false;
 
         printf("*** Source genotype:\n");
@@ -151 +156 @@
         printGen(g1);
         MultiMap m;
-        Geno g2 = g1.getConverted(dst, &m);
+        Geno g2 = g1.getConverted(dst, &m, using_checkpoints);
         printf("*** Converted to f%c:\n", dst);
         printGen(g2);
-        if (m.isEmpty())
-                printf("(conversion map not available)\n");
+
+        if (using_checkpoints)
+        { // using Model with checkpoints
+                Model m1(g2, false, true);//true=using_checkpoints
+                printf("\nModel built from the converted f%c genotype has %d checkpoints\n", g2.getFormat(), m1.getCheckpointCount());
+                Model m2(g1, false, true);//true=using_checkpoints
+                printf("Model built from the source f%c genotype has %d checkpoints\n", g1.getFormat(), m2.getCheckpointCount());
+                // accessing individual checkpoint models (if available)
+                if (m1.getCheckpointCount() > 0)
+                {
+                        int c = m1.getCheckpointCount() / 2;
+                        Model *cm = m1.getCheckpoint(c);
+                        printf("Checkpoint #%d (%d parts, %d joint, %d neurons)\n%s", c, cm->getPartCount(), cm->getJointCount(), cm->getNeuroCount(), cm->getF0Geno().getGenesAndFormat().c_str());
+                }
+        }
         else
-        {
-                printf("Conversion map:\n");
-                m.print();
-                printConvMap(g1.getGenes(), g2.getGenes(), m);
-                printf("Reverse conversion map:\n");
-                MultiMap rm;
-                rm.addReversed(m);
-                rm.print();
-                printConvMap(g2.getGenes(), g1.getGenes(), rm);
-        }
-
-        Model mod1(g1, 1);
-        printf("\nModel map for f%c genotype:\n", g1.getFormat());
-        printModelMap(g1.getGenes(), mod1.getMap());
-        mod1.getMap().print();
-        Model mod2(g2, 1);
-        printf("\nModel map for f%c genotype:\n", g2.getFormat());
-        printModelMap(g2.getGenes(), mod2.getMap());
-        mod2.getMap().print();
+        { // there is no mapping for checkpoints so it's nothing interesting to see here in the checkpoints mode
+                if (m.isEmpty())
+                        printf("(conversion map not available)\n");
+                else
+                {
+                        printf("Conversion map:\n");
+                        m.print();
+                        printConvMap(g1.getGenes(), g2.getGenes(), m);
+                        printf("Reverse conversion map:\n");
+                        MultiMap rm;
+                        rm.addReversed(m);
+                        rm.print();
+                        printConvMap(g2.getGenes(), g1.getGenes(), rm);
+                }
+
+                Model mod1(g1, 1);
+                printf("\nModel map for f%c genotype:\n", g1.getFormat());
+                printModelMap(g1.getGenes(), mod1.getMap());
+                MultiMap mod1combined;
+                mod1combined.addCombined(mod1.getMap(), getModelDisplayMap());
+                mod1combined.print();
+                Model mod2(g2, 1);
+                printf("\nModel map for f%c genotype:\n", g2.getFormat());
+                printModelMap(g2.getGenes(), mod2.getMap());
+                MultiMap mod2combined;
+                mod2combined.addCombined(mod2.getMap(), getModelDisplayMap());
+                mod2combined.print();
+        }
         return 0;
 }