Changeset 194 for cpp/frams/genetics/fT/oper_fTest.h

Timestamp:

03/25/14 00:15:11 (11 years ago)

Author:

Maciej Komosinski

Message:

Updated sources of the fT (ATGC sequences) genetic operators - useful as an educational example for developers; added genooper_test_fTest.cpp as a demo; removed outdated sources that now have new counterparts

Location:

cpp/frams/genetics/fT

Files:

• . (added)
• oper_fTest.h (copied) (copied from cpp/geno_fx/geno_ftest.h) (2 diffs)

cpp/frams/genetics/fT/oper_fTest.h

@@ -1 @@
-// This file is a part of the Framsticks GenoFX library.
-// Copyright (C) 2002-2011  Maciej Komosinski.  See LICENSE.txt for details.
+// This file is a part of the Framsticks GDK.
+// Copyright (C) 2002-2014  Maciej Komosinski and Szymon Ulatowski.  See LICENSE.txt for details.
 // Refer to http://www.framsticks.com/ for further information.
 
-#ifndef _GENO_FTEST_H_
-#define _GENO_FTEST_H_
+#ifndef _GENOOPER_FTEST_H_
+#define _GENOOPER_FTEST_H_
 
-#include "param.h"
-#include "sstring.h"
-#include "geno_fx.h"
+#include "../oper_fx.h"
 
 /** \file */
@@ -16 +14 @@
 \author Maciej Komosinski
 
-This is a very simple class to illustrate basic genetic operations.
-To compile this code, you may need some GDK files.
-For a more sophisticated example of Geno_f4 derived from Geno_fx, refer to
-the available source on developmental encoding and f4 genotype format.
+This is a very simple class that illustrates basic genetic operations performed on ATGC sequences.
+For a more sophisticated and realistic examples of genetic formats and operators derived from GenoOperators,
+refer to the available source for genetic formats f9, fF, and f4.
 
 \sa \ref geno_ftest_example
-*/      
+*/
 
-class Geno_ftest : public Geno_fx
+class GenoOper_fTest : public GenoOperators
 {
- public:
-   Geno_ftest();
-   int checkValidity(const char *);
-   int validate(char *&);
-   int mutate(char *&g,float& chg);
-   int crossOver(char *&g1,char *&g2,float& chg1,float& chg2);
-   unsigned long style(const char *g, int pos);
-   char* getSimplest() {return "GTTCAGATC";}
+public:
+        GenoOper_fTest();
+        int checkValidity(const char *);
+        int validate(char *&);
+        int mutate(char *&geno, float& chg, int &method);
+        int crossOver(char *&g1, char *&g2, float& chg1, float& chg2);
+        unsigned long style(const char *g, int pos);
+        const char* getSimplest() { return "GATCGATTACA"; }
 
-   double prob;
+        double prob;
 };
 
 #endif
-