Changeset 145 for cpp/frams/_demos/f0_variants_test.cpp

Timestamp:

02/26/14 20:21:22 (11 years ago)

Author:

sz

Message:

Genetics reorganization (affects ALL applications!):

• Converters/Validators? are now configured/initialized in a more verbose but also less confusing way
• At the same time, the PreconfiguredGenetics? object will help you avoid the increased complexity by creating the ready-to-use environment that is sufficient in 99% of cases (see the demos)
• Format F genetics updated (work in progress)

File:

• cpp/frams/_demos/f0_variants_test.cpp (modified) (2 diffs)

cpp/frams/_demos/f0_variants_test.cpp ¶

@@ -8 +8 @@
 #include <frams/virtfile/stdiofile.h>
 
+#include <frams/genetics/defgenoconv.h>
 #include <frams/model/model.h>
-#include <frams/genetics/defgenoconv.h>
 #include <frams/errmgr/stdouterr.h>
-
-StdoutErrorHandler err; //redirect model-related errors to stdout
-DefaultGenoConvManager gcm; //without this object the application would only handle "format 0" genotypes
 
 void save_as_f0(SString &gen,Model &m,bool omit_default_values)
@@ -77 +74 @@
 int main(int argc,char*argv[])
 {
+StdoutErrorHandler err;//the default ErrorHandler constructor automatically registers this object to receive framsg messages (and in this case, redirect them to standard output)
+
+//without converters the application would only handle "format 0" genotypes
+DefaultGenoConvManager gcm;
+gcm.addDefaultConverters();
+Geno::useConverters(gcm);
+
+ModelGenoValidator model_validator;
+Geno::addValidator(&model_validator); //This simple validator handles all cases where a converter for a particular format is available but there is no genetic operator. Converters may be less strict in detecting invalid genotypes but it is better than nothing
+
 SString gen(argc>1?argv[1]:"X[|G:1.23]");
 if (!strcmp(gen,"-"))