Timeline



08/18/16:

22:01 Changeset [586] by konrad
Tiny refactoring of tree-genealogy.py
21:58 Changeset [585] by konrad
Added an option for defining colors of crossover / mutation lines from the command line
21:37 Changeset [584] by oriona
Positions of foraminifera, reticulopodia and nutrients corrected.
15:35 Changeset [583] by oriona
Chamber growth visualization moved to the separate function.
14:41 Changeset [582] by Maciej Komosinski
Added comments and TODOs
14:09 Changeset [581] by Maciej Komosinski
Brighter colors
12:30 Changeset [580] by oriona
Vertical position of enhanced visualization of nutrient lowered.
12:15 Changeset [579] by oriona
Vertical position of foraminifera lowered. Color of body and reticulopodia unified.

08/09/16:

21:29 Changeset [578] by sz
object creation and removal is now reflected in the blender scene view (using the "hide" property keyframes)
19:38 Changeset [577] by konrad
Supporting coloring edges and nodes by type, scalable dots
18:30 Changeset [576] by konrad
Simple scale
01:09 Changeset [575] by Maciej Komosinski
When the last chamber is growing, make it gray and add extra information in its "i" field
01:08 Changeset [574] by Maciej Komosinski
More strict validation of numeric type definitions: min without max is now invalid. More code is now reused.

08/08/16:

22:49 Changeset [573] by oriona
Inherited entry for cross-over corrected.
20:13 Changeset [572] by konrad
Added crossover and support for Inheritance table (but the table itself is not used currently, we are assuming Inheritance = 1!)
16:10 Changeset [571] by konrad
Additional options in tree-genealogy.py, dots and jitter
01:00 Changeset [570] by Maciej Komosinski
Improved help message
00:49 Changeset [569] by oriona
Chamber growth visualization time extended. Nutrient energy corrected.

08/07/16:

17:02 Changeset [568] by oriona
Used secPerStep values added in help, setPerStep in show set to 50.
15:05 Changeset [567] by oriona
Chamber growth visualization added, [OFFSPRING] message added, refactoring.

08/06/16:

02:16 Changeset [566] by konrad
Added REAL time option for tree-genealogy.py, renamed previous REAL time to BIRTHS time
01:27 Changeset [565] by oriona
Script for plotting results of the MDS added.

08/05/16:

23:25 Changeset [564] by konrad
some changes to drawing style + non-random dissimilarity + assertion
23:15 Changeset [563] by konrad
updated to the new input format
20:23 Changeset [562] by Maciej Komosinski
Added a script to draw genealogical trees based on parent-child relationship information

08/04/16:

23:32 Changeset [561] by Maciej Komosinski
7% chamber growth instead of 5%; tighter spiral in morphology

08/03/16:

00:29 Changeset [560] by Maciej Komosinski
Fixed a typo

08/02/16:

21:21 Changeset [559] by Maciej Komosinski
Foram genotype generator can produce genotypes with the last chamber smaller ("growing" from 0 to 1)
20:42 Changeset [558] by Maciej Komosinski
- Add color to Parts - Tighter spiral
18:52 Changeset [557] by Maciej Komosinski
- Fixed extra space after property ID - A function to generate simple planispiral forams

08/01/16:

15:31 Changeset [556] by oriona
Properties descriptions corrected.

07/31/16:

23:33 Changeset [555] by oriona
Visual style for enhanced nutrients restored.
23:26 Changeset [554] by oriona
Refactoring, change of foraminifera direction at world boundary added.
02:25 Changeset [553] by Maciej Komosinski
Added visual style for "enhanced nutrients"

07/30/16:

15:18 Changeset [552] by oriona
Dir_changed_sec changed from global to ExpProperty?, new divisionCost and energy_nut, direction change counter added in creature lifeparams, lifespan log added.
03:19 Changeset [551] by Maciej Komosinski
PreconfiguredGenetics? warns about unexpected use case and unregisters its objects on destruction
03:18 Changeset [550] by Maciej Komosinski
LoggerToStdout? used in geometry tests. PreconfiguredGenetics? moved to execute() (near other init things)
02:38 Changeset [549] by Maciej Komosinski
More correct use of PreconfiguredGenetics?: avoid static objects, create after logger is configured (so warnings can be printed)
02:37 Changeset [548] by Maciej Komosinski
Improved description/docs

07/29/16:

23:58 Ticket #53 (ModelGeometry: Uninitialized Pt3D object?) closed by Maciej Komosinski
invalid: False alarm! Uninitialized was purposeful where it was detected.
00:21 Changeset [547] by oriona
PreconfiguredGenetics? added in geometrytestutils

07/28/16:

23:59 Ticket #53 (ModelGeometry: Uninitialized Pt3D object?) created by Maciej Komosinski
The first point to enter EllipsoidSurface::tryGetNext(Pt3D &point) is …
23:58 Ticket #52 (ModelGeometry: test geometry measure using boundary test cases and valgrind) created by Maciej Komosinski
23:57 Ticket #51 (ModelGeometry: sqrt(negative)) created by Maciej Komosinski
"sqrt: DOMAIN error" for example: […] Visual Studio output: …
03:39 Changeset [546] by Maciej Komosinski
Renamed: Model::buildUsingNewShapes -> Model::buildUsingSolidShapeTypes() Added class SolidsShapeTypeModel? (for making ball-and-stick Models look like solids-type Models) ModelGeometryInfo? functions: findSizesAndAxesOfModel(), volume() and area() now accept ball-and-stick Models (using SolidsShapeTypeModel? class) [refs #46] and possibly closes this issue (needs verification)
01:11 Changeset [545] by Maciej Komosinski
Dictionary.set() documentation updated
01:09 Changeset [544] by Maciej Komosinski
Renamed: Model::getShape() ==> Model::getShapeType() Model::SHAPE_OLD ==> Model::SHAPE_BALL_AND_STICK Model::SHAPE_NEW ==> Model::SHAPE_SOLIDS Part::SHAPE_DEFAULT ==> Part::SHAPE_BALL_AND_STICK Joint::SHAPE_DEFAULT ==> Joint::SHAPE_BALL_AND_STICK Joint::SHAPE_SOLID ==> Joint::SHAPE_FIXED

07/27/16:

20:08 Changeset [543] by Maciej Komosinski
Improved description
17:52 Changeset [542] by Maciej Komosinski
Explicit casting to integer ("0+x" trick no longer works)

07/26/16:

18:52 Changeset [541] by oriona
Division by 0.0 for a single ellipsoid fixed [closes #42]. Sampling the same point twice fixed.
18:34 Changeset [540] by oriona
Meshbuilder.cpp added.
18:20 Ticket #42 (ModelGeometry division by 0.0 for a single ellipsoid shape) closed by oriona
fixed: In 539: […]
18:20 Changeset [539] by oriona
Division by 0.0 for a single ellipsoid fixed [closes #42]. Sampling the same point twice fixed.

07/24/16:

13:50 Changeset [538] by Maciej Komosinski
Value of the assignment statement is now consistently the assigned value. Previously it was the value returned from set() (in cases where set() is used and the assigned expression is not a constant). Interestingly, Dictionary.set() returns the "before" value for the given key, and this created the delayed "assignment propagation" effect.
13:45 Changeset [537] by Maciej Komosinski
ExpParams? -> ExpProperties? (compatibility with v5.x)

07/20/16:

14:57 Changeset [536] by Maciej Komosinski
"Shaped" models use the same p.mass calculation as "old" models (influences simulation stability)
14:57 Changeset [535] by Maciej Komosinski
- More strict type description checking when adding a property in mutableparam - Error message when the param property could not be added for some reason
01:17 Changeset [534] by Maciej Komosinski
Renamed: get/setGene -> get/setGenes, setGeneOnly -> setGenesAssumingSameFormat

07/19/16:

18:12 Changeset [533] by Maciej Komosinski
- Improved error message on superfluous param values - Don't call flags(i) for illegal i
18:11 Changeset [532] by Maciej Komosinski
A new set of getStyle/getFullStyle functions in GenMan? and cosmetic rename of other functions (first letter lowercase)
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