source: cpp/frams/_demos/genoconv_test.cpp @ 968

// This file is a part of Framsticks SDK.  http://www.framsticks.com/
// Copyright (C) 1999-2018  Maciej Komosinski and Szymon Ulatowski.
// See LICENSE.txt for details.

#include <ctype.h>
#include <frams/genetics/defgenoconv.h>
#include <frams/model/model.h>
#include <frams/util/multimap.h>
#include <common/virtfile/stdiofile.h>
#include "printconvmap.h"
#include <common/loggers/loggertostdout.h>

/**
 @file
 Sample code: Genotype converter class
 */

/// Sample Geno converter not using Model class.
/// (This converter generates the same output for each input).
/// Such a converter is responsible for doing valid f0 (or other format) output and storing temporary data.
class GenoConv_Test : public GenoConverter
{
public:
        GenoConv_Test()
        {
                name = "Test Converter";
                in_format = 'x';
        }
        SString convert(SString &i, MultiMap *map, bool using_checkpoints) { return SString("after conversion..."); }
        ~GenoConv_Test() {}
};

/// Sample Geno converter using Model class.
/// (This converter generates the same output for each input).
class GenoConv_Test2 : public GenoConverter
{
public:
        GenoConv_Test2()
        {
                name = "Test Converter #2";
                in_format = 'y';
        }

        SString convert(SString &i, MultiMap *map, bool using_checkpoints)
        {
                Model mod;
                mod.open();
                mod.addFromString(Model::PartType, "0,0,0");
                mod.addFromString(Model::PartType, "0,0,-1");
                mod.addFromString(Model::JointType, "0,1");
                mod.getPart(1)->p.y += 0.2; //as an example, directly modify position of part #1
                mod.close();
                return mod.getF0Geno().getGenes();
        }

        ~GenoConv_Test2() {}
};

/// Sample Geno converter supporting conversion mapping.
/// The conversion is very simple: any sequence of <digit><character>
/// (but not inside neurons) is replaced by the repeated sequence of the character.
class GenoConv_Test3 : public GenoConverter
{
public:
        GenoConv_Test3()
        {
                name = "Test Converter #3";
                in_format = "multiply";
                out_format = '1';
                mapsupport = 1;
        }
        SString convert(SString &in, MultiMap *map, bool using_checkpoints);
        ~GenoConv_Test3() {}
};

/** main converting routine - most important: direct conversion map example */
SString GenoConv_Test3::convert(SString &in, MultiMap *map, bool using_checkpoints)
{
        SString dst;
        const char* src = in.c_str();
        const char* t;
        int insideneuron = 0;
        int n;
        for (t = src; *t; t++)
        {
                if (insideneuron&&*t == ']') insideneuron = 0;
                if (*t == '[') insideneuron = 1;
                if ((!insideneuron) && isdigit(*t) && t[1])
                { // special sequence detected!
                        n = *t - '0';
                        t++; // *t will be repeated 'n' times
                        for (int i = 0; i < n; i++)
                                dst += *t;
                        if (map) // fill in the map only if requested
                                map->add(t - src, t - src, dst.len() - n, dst.len() - 1);
                        // meaning: source character (t-src) becomes (dst.len()-n ... dst.len()-1)
                }
                else
                {
                        dst += *t;
                        if (map)
                                map->add(t - src, t - src, dst.len() - 1, dst.len() - 1);
                        // meaning: map single to single character: (t-src) into (dst.len()-1)
                }
        }
        return dst;
}


///////////////////////////////////////////////

void printGen(Geno &g)
{
        printf("Genotype:\n%s\nFormat: %s\nValid: %s\nComment: %s\n",
               g.getGenes().c_str(), g.getFormat().c_str(), g.isValid() ? "yes" : "no", g.getComment().c_str());
}

static int goodWidthForFormat(const SString& genotype_format)
{
        return genotype_format == "0" ? 45 : 15; // more space for long f0 lines
}

// arguments:
//     genotype (or - meaning "read from stdin") [default: X]
//     target format [default: 0]
//     "checkpoints" (just write this exact word) [default: not using checkpoints]
int main(int argc, char *argv[])
{
        LoggerToStdout messages_to_stdout(LoggerBase::Enable);

        DefaultGenoConvManager gcm;
        gcm.addDefaultConverters();
        gcm.addConverter(new GenoConv_Test());
        gcm.addConverter(new GenoConv_Test2());
        gcm.addConverter(new GenoConv_Test3());
        Geno::useConverters(&gcm);

        Geno::Validators validators;
        ModelGenoValidator model_validator;
        validators += &model_validator;
        Geno::useValidators(&validators);

        SString src;
        if (argc > 1)
        {
                src = argv[1];
                if (src == "-")
                {
                        StdioFILEDontClose in(stdin);
                        src = "";
                        loadSString(&in, src, false);
                }
        }
        else
                src = "X";
        SString dst = (argc > 2) ? *argv[2] : '0';
        bool using_checkpoints = (argc > 3) ? (strcmp(argv[3], "checkpoints") == 0) : false;

        printf("*** Source genotype:\n");
        Geno g1(src);
        printGen(g1);
        MultiMap m;
        Geno g2 = g1.getConverted(dst, &m, using_checkpoints);
        printf("*** Converted to f%s:\n", dst.c_str());
        printGen(g2);

        if (using_checkpoints)
        { // using Model with checkpoints
                Model m1(g2, false, true);//true=using_checkpoints
                printf("\nModel built from the converted f%s genotype has %d checkpoints\n", g2.getFormat().c_str(), m1.getCheckpointCount());
                Model m2(g1, false, true);//true=using_checkpoints
                printf("Model built from the source f%s genotype has %d checkpoints\n", g1.getFormat().c_str(), m2.getCheckpointCount());
                // accessing individual checkpoint models (if available)
                if (m1.getCheckpointCount() > 0)
                {
                        int c = m1.getCheckpointCount() / 2;
                        Model *cm = m1.getCheckpoint(c);
                        printf("Checkpoint #%d (%d parts, %d joint, %d neurons)\n%s", c, cm->getPartCount(), cm->getJointCount(), cm->getNeuroCount(), cm->getF0Geno().getGenesAndFormat().c_str());
                }
        }
        else
        { // there is no mapping for checkpoints so it's nothing interesting to see here in the checkpoints mode
                if (m.isEmpty())
                        printf("(conversion map not available)\n");
                else
                {
                        printf("Conversion map:\n");
                        m.print();
                        printConvMap(g1.getGenes(), g2.getGenes(), m, goodWidthForFormat(g1.getFormat()));
                        printf("Reverse conversion map:\n");
                        MultiMap rm;
                        rm.addReversed(m);
                        rm.print();
                        printConvMap(g2.getGenes(), g1.getGenes(), rm, goodWidthForFormat(g2.getFormat()));
                }

                Model mod1(g1, 1);
                printf("\nModel map for f%s genotype:\n", g1.getFormat().c_str());
                ModelDisplayMap dm1(mod1);
                dm1.print(goodWidthForFormat(g1.getFormat()));
                MultiMap mod1combined;
                mod1combined.addCombined(mod1.getMap(), dm1.getMap());
                mod1combined.print();
                Model mod2(g2, 1);
                printf("\nModel map for f%s genotype:\n", g2.getFormat().c_str());
                ModelDisplayMap dm2(mod2);
                dm2.print(goodWidthForFormat(g2.getFormat()));
                MultiMap mod2combined;
                mod2combined.addCombined(mod2.getMap(), dm2.getMap());
                mod2combined.print();
        }
        return 0;
}