1 | /** |
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2 | * conv_f4.h - f4 conversion functions. |
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3 | * |
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4 | * f4genotype - f4 format genotype conversions for FramSticks |
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5 | * |
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6 | * Copyright (C) 1999,2000 Adam Rotaru-Varga (adam_rotaru@yahoo.com) |
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7 | * Copyright (C) 2001-2003 Maciej Komosinski |
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8 | * |
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9 | * This library is free software; you can redistribute it and/or |
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10 | * modify it under the terms of the GNU Lesser General Public |
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11 | * License as published by the Free Software Foundation; either |
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12 | * version 2.1 of the License, or (at your option) any later version. |
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13 | * |
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14 | * This library is distributed in the hope that it will be useful, |
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15 | * but WITHOUT ANY WARRANTY; without even the implied warranty of |
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16 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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17 | * Lesser General Public License for more details. |
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18 | * |
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19 | * You should have received a copy of the GNU Lesser General Public |
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20 | * License along with this library; if not, write to the Free Software |
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21 | * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA |
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22 | * |
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23 | */ |
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24 | |
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25 | #ifndef _CONV_F4_H_ |
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26 | #define _CONV_F4_H_ |
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27 | |
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28 | #include "model.h" |
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29 | #include "modelparts.h" |
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30 | #include "genoconv.h" |
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31 | #include "f4_general.h" |
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32 | |
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33 | |
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34 | // The f4->f0 converter |
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35 | class GenoConv_F40: public GenoConverter |
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36 | { |
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37 | public: |
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38 | GenoConv_F40(); |
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39 | SString convert(SString &in, MultiMap * map); |
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40 | }; |
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41 | |
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42 | |
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43 | // a test-only f4->f1 converter, approximates only |
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44 | class GenoConv_F41_TestOnly: public GenoConverter |
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45 | { |
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46 | public: |
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47 | GenoConv_F41_TestOnly(); |
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48 | SString convert(SString &in, MultiMap * map); |
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49 | }; |
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50 | |
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51 | |
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52 | // A Model descendant, which support build from an f4 genotype. |
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53 | class f4_Model: public Model |
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54 | { |
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55 | public: |
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56 | f4_Model(); |
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57 | ~f4_Model(); |
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58 | int buildFromF4(SString &geno); |
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59 | void toF1Geno(SString &out); // output to f1 format, approximation |
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60 | private: |
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61 | f4_Cells * cells; |
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62 | int buildModelRec(f4_Cell * ndad); |
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63 | /** |
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64 | * Get a cell which is a stick, by traversing dadlinks. |
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65 | */ |
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66 | f4_Cell * getStick(f4_Cell * C); |
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67 | int error; |
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68 | int errorpos; |
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69 | }; |
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70 | |
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71 | |
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72 | #endif |
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73 | |
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