

@713

4 years 
Maciej Komosinski 
Made error message more specific



@712

4 years 
Maciej Komosinski 
Improved status and error messages



@711

4 years 
konrad 
Logs without [BORN] entries (only [OFFSPRING]) should load properly now



@710

4 years 
konrad 
Added multiinputfile support (eg. ./treegenealogy.py i file1.out …



@709

4 years 
konrad 
treegenealogy.py should now work correctly with the order of events …



@708

4 years 
Maciej Komosinski 
Improved diagnostic message



@707

4 years 
konrad 
Added a warning message about merging nodes with a virtual parent node.



@706

4 years 
konrad 
No more svn ignore on mdsandtrees



@705

4 years 
konrad 
Added an example of configuration file with colormaps



@702

4 years 
konrad 
Nonnormalized step values for cmap can now extend outside the range …



@701

4 years 
konrad 
Fixed a bug that could occur for trees with a lot of crossover …



@700

4 years 
konrad 
Colors support matplotlib cmaps now. 'color' property in config file …



@697

4 years 
Maciej Komosinski 
More legible and consistent notation of ranges



@696

4 years 
konrad 
Changes to formating of min/max values of properties



@695

4 years 
konrad 
Using matplotlib's color package to interpret colors. Color can be now …



@694

4 years 
konrad 
Some improvements in behavior for big trees



@690

4 years 
konrad 
Better (but not ideal) behavior for very big trees



@689

4 years 
Maciej Komosinski 
More informative message



@688

4 years 
Maciej Komosinski 
More informative message



@687

4 years 
konrad 
Using "inherited' to decide horizontal distance from the parent



@686

4 years 
Maciej Komosinski 
Made loop iteration variable implicit ("enumerate")



@685

4 years 
Maciej Komosinski 
Displays progress as convenient percentage



@684

4 years 
Maciej Komosinski 
Minor optimization



@683

4 years 
Maciej Komosinski 
Slightly more helpful error message



@682

4 years 
konrad 
Broken last lines in input logs will not crash the script anymore (the …



@681

4 years 
konrad 
Improved the compute_depth function so now it works much faster for …



@680

4 years 
konrad 
Fixed the "ValueError?: max() arg is an empty sequence" error occurring …



@679

4 years 
konrad 
compute_adepth no longer uses recursion (so it should work better …



@678

4 years 
konrad 
Fixed a bug attempting to normalize a list of lists



@677

4 years 
konrad 
Fixed a bug with an incorrect order of assigning placement to nodes



@633

5 years 
konrad 
Added measure of progress (based on regression of timedistances …



@628

5 years 
konrad 
Fixed printing texts in svg and added support for additional …



@627

5 years 
konrad 
treegenealogy.py is now supporting multiple virtual parents (they are …



@626

5 years 
konrad 
Added multisampling (antialiasing) option for raster output



@625

5 years 
konrad 
Font for treegenealogy.py



@624

5 years 
konrad 
New, faster, more flexible and refactored version of the …



@623

5 years 
konrad 
Some minor changes



@622

5 years 
konrad 
Added an option to restrict the tree to first X nodes.



@621

5 years 
konrad 
Rewritten prepos_children to the iterative form + Turned on some debugging



@620

5 years 
konrad 
The parameters should not be case specific anymore, also added some …



@619

5 years 
konrad 
Changed spine and skeleton drawing methods from recurrent to iterative …



@618

5 years 
konrad 
Removed the recurrent version of the treedrawing method, fixed and …



@617

5 years 
konrad 
Added nonrecurrent verion of tree drawing function, …



@616

5 years 
Maciej Komosinski 
Introduced an option to swap (exchange) X and Y axes



@615

5 years 
Maciej Komosinski 
Improved descriptions



@614

5 years 
Maciej Komosinski 
Fixed typos



@613

5 years 
Maciej Komosinski 
Introduced options to flip (invert, negate) X and/or Y axes



@609

5 years 
Maciej Komosinski 
Labels can have colors dependent on label text



@608

5 years 
Maciej Komosinski 
Displays the fraction of variance preserved after MDS



@607

5 years 
Maciej Komosinski 
Updated for new format of dissimilarity matrix (with the optional two …



@604

5 years 
Maciej Komosinski 
Made the amount of jitter a continuous, adjustable parameter



@603

5 years 
oriona 
Integer command line arguments converted to ints in main call.



@602

5 years 
Maciej Komosinski 
 More flexible reading of distance matrices from files
 Can also …



@600

5 years 
oriona 
Number of returned dimensions set to minimum of desired number and the …



@599

5 years 
oriona 
Function for computing variances removed.



@598

5 years 
oriona 
MDS algorithm changed to cmdscale. Coordinates export to file added.



@597

5 years 
Maciej Komosinski 
No longer ignores "jitter" and "outname" parameters



@596

5 years 
Maciej Komosinski 
Uncomment to make it work with no graphical backend



@594

5 years 
konrad 
Fixed drawing the spine and the skeleton for the treegenealogy.py



@589

5 years 
konrad 
Fixed dark lines inside lines in treegenealogy.py



@586

5 years 
konrad 
Tiny refactoring of treegenealogy.py



@585

5 years 
konrad 
Added an option for defining colors of crossover / mutation lines from …



@577

5 years 
konrad 
Supporting coloring edges and nodes by type, scalable dots



@576

5 years 
konrad 
Simple scale



@572

5 years 
konrad 
Added crossover and support for Inheritance table (but the table …



@571

5 years 
konrad 
Additional options in treegenealogy.py, dots and jitter



@566

5 years 
konrad 
Added REAL time option for treegenealogy.py, renamed previous REAL …



@565

5 years 
oriona 
Script for plotting results of the MDS added.



@564

5 years 
konrad 
some changes to drawing style + nonrandom dissimilarity + assertion



@563

5 years 
konrad 
updated to the new input format



@562

5 years 
Maciej Komosinski 
Added a script to draw genealogical trees based on parentchild …
