# # ChangeLog for cpp/frams/model/similarity # # Generated by Trac 1.2.1 # 03/28/24 17:35:11 Fri, 22 Apr 2022 16:14:32 GMT Maciej Komosinski [1173] * cpp/frams/model/geometry/geometryutils.cpp (modified) * cpp/frams/model/similarity/simil-measure-base.cpp (modified) Fixed the descriptor distribution similarity measure: we don't want ... Fri, 22 Apr 2022 15:42:13 GMT Maciej Komosinski [1172] * cpp/frams/model/similarity/EMD/emd.c (modified) * cpp/frams/model/similarity/EMD/emd.h (modified) Introduced EMD_LIMIT_WARNING_MESSAGES to limit the number of warning ... Fri, 01 Oct 2021 21:40:49 GMT Maciej Komosinski [1158] * cpp/common/threads.h (modified) * cpp/frams/Makefile-SDK (modified) * cpp/frams/config/sdk-build-config.h (moved) * cpp/frams/frams-objects.h (modified) * cpp/frams/genetics/fS/fS_general.h (modified) * cpp/frams/model/geometry/modelgeoclass.cpp (modified) * cpp/frams/model/modelobj.cpp (modified) * cpp/frams/model/similarity/measure-greedy.cpp (modified) * cpp/frams/neuro/impl/neuroimpl-fuzzy.cpp (modified) * cpp/frams/util/extvalue.h (modified) * cpp/frams/vm/classes/3dobject.cpp (modified) * cpp/frams/vm/classes/collectionobj.cpp (modified) * cpp/frams/vm/classes/collectionobj.h (modified) * cpp/frams/vm/classes/genoobj.cpp (modified) * framspy/deterministic.sim (modified) * framspy/frams-test-props.py (modified) * framspy/run-evolalg-examples.cmd (modified) * framspy/sample-period-longest.sim (modified) Cosmetic/minor improvements Fri, 16 Apr 2021 13:55:34 GMT Maciej Komosinski [1130] * cpp/common/2d.h (modified) * cpp/common/Convert.cpp (modified) * cpp/common/log.cpp (modified) * cpp/common/loggers/loggers.h (modified) * cpp/common/loggers/loggertostdout.cpp (modified) * cpp/common/nonstd_stl.h (modified) * cpp/common/util-stl.h (modified) * cpp/common/util-string.cpp (modified) * cpp/frams/_demos/evol_test.cpp (modified) * cpp/frams/_demos/printconvmap.cpp (modified) * cpp/frams/canvas/neurodiagram.cpp (modified) * cpp/frams/canvas/nn_smart_layout.cpp (modified) * cpp/frams/genetics/f1/f1_conv.cpp (modified) * cpp/frams/genetics/f9/f9_conv.cpp (modified) * cpp/frams/genetics/fB/fB_conv.cpp (modified) * cpp/frams/genetics/fB/fB_oper.cpp (modified) * cpp/frams/genetics/fF/fF_conv.cpp (modified) * cpp/frams/genetics/fF/fF_oper.cpp (modified) * cpp/frams/genetics/fS/fS_general.cpp (modified) * cpp/frams/genetics/fS/fS_oper.cpp (modified) * cpp/frams/genetics/fn/fn_conv.h (modified) * cpp/frams/genetics/geneprops.cpp (modified) * cpp/frams/model/autoname.cpp (modified) * cpp/frams/model/model.h (modified) * cpp/frams/model/similarity/EMD/emd.c (modified) * cpp/frams/model/similarity/measure-distribution.cpp (modified) * cpp/frams/neuro/impl/neuroimpl-channels.cpp (modified) * cpp/frams/neuro/impl/neuroimpl-fuzzy-f0.cpp (modified) * cpp/frams/neuro/impl/neuroimpl-fuzzy.cpp (modified) * cpp/frams/param/mutableparam.cpp (modified) * cpp/frams/param/paramobj.cpp (modified) * cpp/frams/util/extvalue.h (modified) * cpp/frams/util/multirange.cpp (modified) * cpp/frams/util/sstring-simple.cpp (modified) * cpp/frams/util/sstring.cpp (modified) * cpp/frams/vm/classes/collectionobj.cpp (modified) Used std::min(), std::max() explicitly to avoid compiler confusion. ... Sun, 11 Apr 2021 00:09:28 GMT Maciej Komosinski [1125] * cpp/common/util-string.h (modified) * cpp/frams/model/geometry/geometryutils.cpp (modified) * cpp/frams/model/similarity/measure-distribution.cpp (modified) Cosmetic Thu, 01 Apr 2021 15:17:15 GMT Maciej Komosinski [1121] * cpp/frams/model/similarity/measure-distribution.cpp (modified) Added comments, removed unused variables Thu, 01 Apr 2021 15:07:37 GMT Maciej Komosinski [1120] * cpp/frams/model/similarity/measure-distribution.cpp (modified) * cpp/frams/model/similarity/measure-distribution.h (modified) Used a local random number generator for full determinism. Introduced ... Fri, 05 Mar 2021 18:34:20 GMT Maciej Komosinski [1100] * cpp/common/loggers/loggers.h (modified) * cpp/frams/model/similarity/simil-measure.cpp (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.expdef (modified) * experiments/frams/foraminifera/data/scripts/foraminifera.inc (modified) * framspy/frams.py (modified) Cosmetic / minor fixes Tue, 09 Feb 2021 10:37:27 GMT oriona [1073] * cpp/frams/model/similarity/measure-greedy.cpp (modified) * cpp/frams/model/similarity/measure-hungarian.cpp (modified) Comments added. Mon, 08 Feb 2021 19:49:50 GMT oriona [1072] * cpp/frams/model/similarity/measure-greedy.cpp (modified) * cpp/frams/model/similarity/measure-hungarian.cpp (modified) Switching off the alignment moved. Mon, 08 Feb 2021 16:07:11 GMT oriona [1071] * cpp/frams/model/similarity/measure-greedy.cpp (modified) * cpp/frams/model/similarity/measure-hungarian.cpp (modified) * cpp/frams/model/similarity/measure-mds-based.cpp (modified) Weighted MDS and switching off the alignment fixed. Wed, 03 Feb 2021 20:51:50 GMT oriona [1070] * cpp/frams/model/similarity/SVD/matrix_tools.cpp (modified) MDS for one-part creatures fixed. Wed, 27 Jan 2021 11:22:01 GMT Maciej Komosinski [1066] * cpp/frams/model/similarity/measure-greedy.cpp (modified) Make names of fields in SimilMeasureGreedy unique because object ... Wed, 27 Jan 2021 11:20:00 GMT Maciej Komosinski [1065] * cpp/frams/model/similarity/simil-measure-base.cpp (modified) More specific error messages Tue, 26 Jan 2021 17:50:37 GMT Maciej Komosinski [1064] * cpp/frams/model/similarity/EMD/emd.c (modified) * cpp/frams/model/similarity/EMD/emd.h (modified) Properly allocated and de-allocated dynamic arrays of size calculated ... Tue, 26 Jan 2021 17:02:06 GMT Maciej Komosinski [1063] * cpp/frams/model/similarity/EMD/emd.c (modified) * cpp/frams/model/similarity/EMD/emd.h (modified) Updated URL for Yossi Rubner's implementation of EMD Tue, 26 Jan 2021 16:41:01 GMT oriona [1062] * cpp/frams/model/similarity/EMD/emd.c (modified) * cpp/frams/model/similarity/EMD/emd.h (modified) * cpp/frams/model/similarity/measure-distribution.cpp (modified) Global arrays moved to emd function. Mon, 25 Jan 2021 19:57:26 GMT oriona [1061] * cpp/frams/model/similarity/EMD/emd.c (modified) Static array removed. Sun, 27 Dec 2020 18:39:44 GMT Maciej Komosinski [1055] * cpp/frams/model/similarity/SVD/lapack.cpp (modified) Added a workaround (potentially incorrect) for numerical instability ... Sun, 27 Dec 2020 18:36:02 GMT Maciej Komosinski [1054] * cpp/frams/model/similarity/measure-distribution.cpp (modified) * cpp/frams/model/similarity/measure-greedy.cpp (modified) * cpp/frams/model/similarity/measure-hungarian.cpp (modified) * cpp/frams/model/similarity/simil-measure.cpp (modified) Proper paramtab group names for similarity measures Fri, 11 Dec 2020 23:32:55 GMT Maciej Komosinski [1052] * cpp/frams/model/similarity/measure-distribution.cpp (modified) * cpp/frams/model/similarity/measure-greedy.cpp (modified) * cpp/frams/model/similarity/measure-hungarian.cpp (modified) * cpp/frams/model/similarity/simil-measure.cpp (modified) * cpp/frams/model/similarity/simil-measure.h (modified) Added a helper function; cosmetic changes in names and descriptions Fri, 11 Dec 2020 20:40:59 GMT Maciej Komosinski [1050] * cpp/frams/model/similarity/EMD/emd.c (modified) Renamed variables that caused problems with g++ 7.3.0 - C99, 7.1.3 ... Fri, 11 Dec 2020 20:36:41 GMT Maciej Komosinski [1048] * cpp/frams/model/similarity/measure-distribution.h (modified) * cpp/frams/model/similarity/measure-greedy.cpp (modified) * cpp/frams/model/similarity/measure-greedy.h (modified) * cpp/frams/model/similarity/measure-hungarian.cpp (modified) * cpp/frams/model/similarity/measure-mds-based.cpp (modified) * cpp/frams/model/similarity/measure-mds-based.h (modified) * cpp/frams/model/similarity/simil-measure-base.cpp (added) * cpp/frams/model/similarity/simil-measure-base.h (added) * cpp/frams/model/similarity/simil-measure.cpp (modified) * cpp/frams/model/similarity/simil-measure.h (modified) SimilMeasure -> SimilMeasureBase; introduced a new class ... Fri, 11 Dec 2020 20:27:20 GMT Maciej Komosinski [1047] * cpp/frams/model/similarity/simil_model.cpp (deleted) * cpp/frams/model/similarity/simil_model.h (deleted) Removed no longer used sources Fri, 11 Dec 2020 20:26:48 GMT Maciej Komosinski [1046] * cpp/frams/model/similarity/measure-distribution.cpp (modified) Fixed a declaration of a static array with a non-constant size in C++ Fri, 11 Dec 2020 19:23:42 GMT oriona [1045] * cpp/frams/Makefile-SDK-files (modified) * cpp/frams/_demos/geometry/apices_test.cpp (modified) * cpp/frams/_demos/geometry/geometrytestutils.cpp (modified) * cpp/frams/_demos/geometry/geometrytestutils.h (modified) * cpp/frams/_demos/geometry/info_test.cpp (modified) * cpp/frams/_demos/geometry/surface_test.cpp (modified) * cpp/frams/_demos/geometry/volume_test.cpp (modified) * cpp/frams/model/geometry/geometryutils.cpp (modified) * cpp/frams/model/geometry/geometryutils.h (modified) * cpp/frams/model/similarity/simil-measure.cpp (modified) Part of GeometryTestUtils functions moved to GeometryUtils. Thu, 10 Dec 2020 21:33:22 GMT oriona [1044] * cpp/frams/Makefile-SDK-files (modified) * cpp/frams/_demos/paramtree_paramlist_test.cpp (modified) * cpp/frams/_demos/simil_test.cpp (modified) * cpp/frams/_demos/simil_unittests.cpp (modified) * cpp/frams/model/similarity/EMD (added) * cpp/frams/model/similarity/EMD/emd.c (added) * cpp/frams/model/similarity/EMD/emd.h (added) * cpp/frams/model/similarity/measure-distribution.cpp (added) * cpp/frams/model/similarity/measure-distribution.h (added) * cpp/frams/model/similarity/measure-greedy.cpp (added) * cpp/frams/model/similarity/measure-greedy.h (added) * cpp/frams/model/similarity/measure-hungarian.cpp (added) * cpp/frams/model/similarity/measure-hungarian.h (added) * cpp/frams/model/similarity/measure-mds-based.cpp (added) * cpp/frams/model/similarity/measure-mds-based.h (added) * cpp/frams/model/similarity/simil-match.cpp (moved) * cpp/frams/model/similarity/simil-match.h (moved) * cpp/frams/model/similarity/simil-measure.cpp (added) * cpp/frams/model/similarity/simil-measure.h (added) * cpp/tests/similarity-tests.txt (modified) * cpp/tests/similarity_goals/distribution.goal (added) Similarity measures code refactored. Distribution-based similarity ... Mon, 13 Jul 2020 11:51:43 GMT Maciej Komosinski [999] * cpp/frams/_demos/f0_variants_test.cpp (modified) * cpp/frams/_demos/full_props.cpp (modified) * cpp/frams/_demos/genoconv_test.cpp (modified) * cpp/frams/_demos/genomanipulation.cpp (modified) * cpp/frams/_demos/geometry/geometrytestutils.cpp (modified) * cpp/frams/_demos/multiline_f0_test.cpp (modified) * cpp/frams/_demos/neuro_layout_test.cpp (modified) * cpp/frams/_demos/neuro_test.cpp (modified) * cpp/frams/_demos/shapeconvert.cpp (modified) * cpp/frams/genetics/f4/f4_oper.cpp (modified) * cpp/frams/genetics/fB/fB_oper.cpp (modified) * cpp/frams/genetics/fH/fH_oper.cpp (modified) * cpp/frams/genetics/fL/fL_oper.cpp (modified) * cpp/frams/genetics/geno.cpp (modified) * cpp/frams/genetics/genoconv.h (modified) * cpp/frams/model/geometry/modelgeoclass.cpp (modified) * cpp/frams/model/model.cpp (modified) * cpp/frams/model/model.h (modified) * cpp/frams/model/modelobj.cpp (modified) * cpp/frams/model/modelparts.cpp (modified) * cpp/frams/model/modelparts.h (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) * cpp/frams/userinput/modelcheckpoints.cpp (modified) * cpp/frams/vm/classes/genoobj.cpp (modified) More consistent usage of "shapetype" (vs. "shape") Thu, 02 Jul 2020 22:32:23 GMT Maciej Komosinski [972] * cpp/frams/_demos/f0_variants_test.cpp (modified) * cpp/frams/_demos/full_props.cpp (modified) * cpp/frams/_demos/genoconv_test.cpp (modified) * cpp/frams/_demos/genomanipulation.cpp (modified) * cpp/frams/_demos/geometry/geometrytestutils.cpp (modified) * cpp/frams/_demos/multiline_f0_test.cpp (modified) * cpp/frams/_demos/neuro_layout_test.cpp (modified) * cpp/frams/_demos/neuro_test.cpp (modified) * cpp/frams/_demos/shapeconvert.cpp (modified) * cpp/frams/genetics/geno.cpp (modified) * cpp/frams/genetics/geno.h (modified) * cpp/frams/genetics/genoconv.cpp (modified) * cpp/frams/genetics/genoconv.h (modified) * cpp/frams/model/model.cpp (modified) * cpp/frams/model/model.h (modified) * cpp/frams/model/modelobj.cpp (modified) * cpp/frams/model/modelparts.h (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) * cpp/frams/userinput/modelcheckpoints.cpp (modified) * cpp/frams/vm/classes/genoobj.cpp (modified) - separate "0" and "0s" formats (for SHAPE_BALL_AND_STICK and ... Thu, 16 May 2019 20:08:18 GMT Maciej Komosinski [877] * cpp/frams/model/similarity/simil_model.cpp (modified) * cpp/frams/model/similarity/simil_model.h (modified) Introduced a shared function to avoid code duplication; more ... Sat, 04 May 2019 21:39:39 GMT Maciej Komosinski [872] * cpp/frams/model/similarity/simil_model.cpp (modified) * cpp/frams/model/similarity/simil_model.h (modified) Fixed error messages, changed int to paInt (for 32/64-bit safety), ... Sat, 04 May 2019 19:12:41 GMT oriona [871] * cpp/frams/model/similarity/simil_model.cpp (modified) Printfs replaced with error messages. Sat, 04 May 2019 18:54:29 GMT oriona [870] * cpp/frams/model/similarity/simil_model.h (modified) Nonexistent function declaration removed. Thu, 02 May 2019 21:50:27 GMT Maciej Komosinski [869] * cpp/frams/Makefile-SDK-files (modified) * cpp/frams/model/similarity/hungarian (added) * cpp/frams/model/similarity/hungarian/hungarian.cpp (added) * cpp/frams/model/similarity/hungarian/hungarian.h (added) * cpp/frams/model/similarity/simil_match.cpp (modified) * cpp/frams/model/similarity/simil_match.h (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) * cpp/frams/model/similarity/simil_model.h (modified) Added another, improved way of calculating dissimilarity of two ... Sun, 07 Oct 2018 11:45:59 GMT oriona [818] * cpp/frams/model/similarity/simil_model.cpp (modified) Help to wMDS field added. Sun, 07 Oct 2018 11:23:11 GMT oriona [817] * cpp/frams/model/similarity/SVD/matrix_tools.cpp (modified) * cpp/frams/model/similarity/SVD/matrix_tools.h (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) * cpp/frams/model/similarity/simil_model.h (modified) MDS procedure replaced with weighted MDS procedure. Mon, 14 May 2018 21:14:15 GMT oriona [782] * cpp/frams/model/similarity/simil_model.cpp (modified) Typos fixed. Wed, 07 Jun 2017 09:59:36 GMT Maciej Komosinski [666] * cpp/frams/model/similarity/simil_model.cpp (modified) Added missing #include Thu, 12 Jan 2017 15:30:41 GMT Maciej Komosinski [647] * cpp/frams/model/similarity/simil_model.cpp (modified) Updated URLs, removed non-ascii characters Tue, 30 Aug 2016 15:42:29 GMT Maciej Komosinski [606] * cpp/frams/_demos/simil_test.cpp (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) * cpp/frams/model/similarity/simil_model.h (modified) Code formatting Tue, 30 Aug 2016 15:39:10 GMT Maciej Komosinski [605] * cpp/frams/_demos/simil_test.cpp (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) * cpp/frams/model/similarity/simil_model.h (modified) - Added 'fixedZaxis' option to paramtab (so that it is accessible ... Sun, 28 Aug 2016 13:19:57 GMT oriona [601] * cpp/frams/_demos/simil_test.cpp (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) * cpp/frams/model/similarity/simil_model.h (modified) Possibility of fixing z axis during the alignment added. Wed, 30 Mar 2016 22:34:37 GMT Maciej Komosinski [492] * cpp/common/nonstd_math.cpp (modified) * cpp/common/nonstd_math.h (modified) * cpp/frams/canvas/nn_smart_layout.cpp (modified) * cpp/frams/genetics/geno.h (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) * cpp/frams/neuro/neuroimpl.cpp (modified) emscripten compatibility Sat, 05 Dec 2015 17:31:38 GMT oriona [455] * cpp/frams/_demos/simil_test.cpp (modified) * cpp/frams/model/similarity/SVD/matrix_tools.cpp (modified) Malloc/free replaced by new/delete, pointers-to-vectors changed into ... Sun, 29 Nov 2015 17:04:54 GMT oriona [451] * cpp/frams/_demos/simil_test.cpp (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) Unused INit commented out. Command line information updated. Sun, 24 May 2015 19:03:46 GMT Maciej Komosinski [389] * cpp/frams/model/similarity/SVD/lapack.cpp (modified) * cpp/frams/model/similarity/SVD/lapack.h (modified) * cpp/frams/model/similarity/SVD/matrix_tools.cpp (modified) * cpp/frams/model/similarity/SVD/matrix_tools.h (modified) Code formatting Sun, 24 May 2015 19:01:18 GMT Maciej Komosinski [388] * cpp/frams/model/similarity/SVD/lapack.cpp (modified) A local PRBS-7 implementation so that this file does not depend on ... Mon, 20 Apr 2015 01:59:22 GMT Maciej Komosinski [370] * cpp/frams/model/similarity/SVD/matrix_tools.cpp (modified) #included file more friendly for *nix'es Mon, 20 Apr 2015 01:16:26 GMT Maciej Komosinski [368] * cpp/frams/model/similarity/SVD/lapack.cpp (modified) * cpp/frams/model/similarity/SVD/matrix_tools.cpp (modified) #includes needed for Embarcadero Sat, 18 Apr 2015 15:58:45 GMT Maciej Komosinski [362] * cpp/frams/model/similarity/simil_model.cpp (modified) Restored object descriptions/docs that were lost Sat, 18 Apr 2015 15:31:31 GMT Maciej Komosinski [361] * cpp/frams/_demos/simil_test.cpp (modified) * cpp/frams/model/similarity/simil_match.cpp (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) Signed/unsigned int issues (r352) resolved differently - in most ... Sat, 18 Apr 2015 14:33:54 GMT Maciej Komosinski [358] * cpp/frams/model/similarity/SVD/lapack.cpp (modified) Commented out "srand(time(NULL))" - this line would affect everything ... Sat, 18 Apr 2015 14:31:13 GMT Maciej Komosinski [357] * cpp/frams/model/similarity/SVD/lapack.h (modified) * cpp/frams/model/similarity/SVD/matrix_tools.cpp (modified) * cpp/frams/model/similarity/SVD/matrix_tools.h (modified) * cpp/frams/model/similarity/simil_match.cpp (modified) * cpp/frams/model/similarity/simil_match.h (modified) * cpp/frams/model/similarity/simil_model.h (modified) Set svn:eol-style to native Sat, 18 Apr 2015 14:29:10 GMT Maciej Komosinski [356] * cpp/frams/model/similarity/simil_model.cpp (modified) Changed default values for weights Thu, 16 Apr 2015 22:51:37 GMT oriona [352] * cpp/frams/_demos/simil_test.cpp (modified) * cpp/frams/model/similarity/simil_match.cpp (modified) * cpp/frams/model/similarity/simil_model.cpp (modified) comparison between signed and unsigned integer expressions fixed Thu, 16 Apr 2015 22:06:34 GMT Maciej Komosinski [350] * cpp/frams/model/similarity/SVD/lapack.cpp (modified) * cpp/frams/model/similarity/SVD/lapack.h (modified) * cpp/frams/model/similarity/SVD/matrix_tools.h (modified) Cosmetic Thu, 16 Apr 2015 19:56:52 GMT oriona [349] * cpp/frams/Makefile-SDK (modified) * cpp/frams/Makefile-SDK-files (modified) * cpp/frams/_demos/simil_match_test.cpp (added) * cpp/frams/_demos/simil_test.cpp (added) * cpp/frams/model/similarity (added) * cpp/frams/model/similarity/SVD (added) * cpp/frams/model/similarity/SVD/lapack.cpp (added) * cpp/frams/model/similarity/SVD/lapack.h (added) * cpp/frams/model/similarity/SVD/matrix_tools.cpp (added) * cpp/frams/model/similarity/SVD/matrix_tools.h (added) * cpp/frams/model/similarity/simil_match.cpp (added) * cpp/frams/model/similarity/simil_match.h (added) * cpp/frams/model/similarity/simil_model.cpp (added) * cpp/frams/model/similarity/simil_model.h (added) implementation of the similarity measure