source: cpp/frams/genetics

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Diff Rev Age Author Log Message
(edit) @835   12 months Maciej Komosinski ISO C++17 compliance including NULL, nullptr, templates and pointer …
(edit) @831   13 months Maciej Komosinski Fixed broken neuron creation (missing argument - regression from r760, …
(edit) @830   13 months Maciej Komosinski "%ld" replaced with "%d" because it refers to int
(edit) @829   13 months Maciej Komosinski Removed unnecessary cast, "long" is equivalent to "int" in our compilations
(edit) @821   14 months Maciej Komosinski Performance and stability improvements in fB, fH, and fL; improved …
(edit) @809   18 months Maciej Komosinski Fixed a signed/unsigned warning
(edit) @808   18 months Maciej Komosinski New option for mutation in numerical encoding fn: mutate all variables …
(edit) @804   18 months Maciej Komosinski Fixed memory leak and uninitialized int
(edit) @803   18 months Maciej Komosinski Performance improvements, including avoiding unnecessary passing of …
(edit) @802   18 months Maciej Komosinski Crossing over with less bloat, but still biologically-inspired
(edit) @801   18 months Maciej Komosinski Added a helper function that counts active neuron classes
(edit) @797   18 months Maciej Komosinski A more complete implementation of fB, fH, fL
(edit) @788   19 months Maciej Komosinski Fixed #include filename for f8 converter
(edit) @787   19 months Maciej Komosinski Removed a comment; sprintf() gives more control and precision than …
(edit) @783   19 months Maciej Komosinski Removed the unused "info" field and fixed a bug with incorrect …
(edit) @780   19 months Maciej Komosinski Added sources for genetic encodings fB, fH, fL
(edit) @779   19 months Maciej Komosinski Unified file names of all files involved in genetic conversions and …
(edit) @777   19 months Maciej Komosinski Fixed a typo
(edit) @776   19 months Maciej Komosinski Removed extra checkpoint
(edit) @774   20 months Maciej Komosinski Removed unused "state" field (issue number 19), improved docs (issues …
(edit) @773   20 months Maciej Komosinski Improved styling implementation, fixes issue number 18 [refs #62]
(edit) @772   20 months Maciej Komosinski Unified #define modifiers in f1 and f4, fixes issue number 16 [refs #62]
(edit) @771   20 months Maciej Komosinski Added color and size modifiers in f4; avoided unnecessary conditions …
(edit) @770   20 months Maciej Komosinski Avoided "min" and "max" as variable names, fixes issue 22 [refs #62]
(edit) @768   21 months Maciej Komosinski Reverted to 100x repeat-until-valid-mutation, required due to how …
(edit) @767   21 months Maciej Komosinski More strict parsing of the repetition counter; bug fixes; improved …
(edit) @765   21 months Maciej Komosinski Wider ranges of allowed values for mutation when only partial …
(edit) @764   21 months Maciej Komosinski Less deterministic (less absorbing) mutation for very narrow allowed …
(edit) @763   21 months Maciej Komosinski Higher precision when storing variable values
(edit) @762   21 months Maciej Komosinski Default sample values for a 2D problem, not 1D; added documentation …
(edit) @761   21 months Maciej Komosinski Introduced a macro for the number of times GenMan? tries to repeat a …
(edit) @760   21 months Maciej Komosinski - added support for new API for neuron types and their properties - …
(edit) @759   21 months Maciej Komosinski f1 and f4 stick properties unified and moved to a separate structure …
(edit) @758   21 months Maciej Komosinski Added a few useful functions providing lists of neurons with specific …
(edit) @757   21 months Maciej Komosinski Removed appending the original fn genotype as a comment in the …
(edit) @752   22 months Maciej Komosinski Mutation in the 'fn' encoding respects custom min,max,stddev for each …
(edit) @751   22 months Maciej Komosinski More versatile mutation function for numbers
(edit) @750   22 months Maciej Komosinski More proper definition of the crossover parameter
(edit) @749   22 months Maciej Komosinski Added a new function to linearly mix two vectors of real numbers
(edit) @748   22 months Maciej Komosinski Configured and activated the new "fn" genetic representation
(edit) @747   22 months Maciej Komosinski Added a new "fn" genetic representation (a vector of real numbers for …
(edit) @743   22 months Maciej Komosinski Introduced different function names in C++ instead of overloading …
(edit) @740   22 months Maciej Komosinski Added support for developmental phases ("checkpoints") to converters …
(edit) @736   22 months Maciej Komosinski Added the new "using_checkpoints" argument to genetic converters so …
(edit) @735   22 months Maciej Komosinski Base genotype converter is now abstract, which triggers compilation …
(edit) @732   22 months Maciej Komosinski Added support for "checkpoints" (intermediate phases of development of …
(edit) @726   23 months Maciej Komosinski - Changed Model::singleStepBuild() to Model::addFromString() to create …
(edit) @720   2 years Maciej Komosinski Param::save2() renamed to saveSingleLine(); unified Param::load() so …
(edit) @719   2 years Maciej Komosinski f1->f0 mapping maps ',' and ')' symbols to the branching Part (earlier …
(edit) @716   2 years Maciej Komosinski The f1 converter is now able to map more than one genotype character …
(edit) @715   2 years Maciej Komosinski GenMan?'s constructor now calls its setDefaults() to initialize all …
(edit) @714   2 years Maciej Komosinski - Setting default NeuroClass? active/genactive in preconfigured …
(edit) @676   2 years Maciej Komosinski Improved comments, removed unnecessary TODO regarding "Rr" modifiers
(edit) @675   2 years Maciej Komosinski Code formatting
(edit) @674   2 years Maciej Komosinski f4 modifiers implemented similarly to f1 modifiers, and a base for …
(edit) @673   2 years Maciej Komosinski Added three functions that may be useful in general
(edit) @672   2 years Maciej Komosinski More appropriate name for the "model_energy_max" variable
(edit) @671   2 years Maciej Komosinski Unified property names of f1 and f4; improved docs; 3.141 -> M_PI
(edit) @670   2 years Maciej Komosinski Improved variable names and docs
(edit) @669   2 years Maciej Komosinski As default foraminifera initial chamber radius in Framsticks units …
(edit) @668   3 years Maciej Komosinski Fixed argument type in GenMan?.getSimplest()
(edit) @667   3 years Maciej Komosinski - fF foraminifera encoding supports scaling (radius) of the initial …
(edit) @664   3 years Maciej Komosinski Mark last Part white - a visual aid for easier editing of f9 genotypes
(edit) @643   3 years Maciej Komosinski The meaning of f9 3D-direction genes made consistent with Framsticks …
(edit) @551   3 years Maciej Komosinski PreconfiguredGenetics? warns about unexpected use case and unregisters …
(edit) @544   3 years Maciej Komosinski Renamed: Model::getShape() ==> Model::getShapeType() Model::SHAPE_OLD …
(edit) @534   3 years Maciej Komosinski Renamed: get/setGene -> get/setGenes, setGeneOnly -> …
(edit) @532   3 years Maciej Komosinski A new set of getStyle/getFullStyle functions in GenMan? and cosmetic …
(edit) @530   3 years Maciej Komosinski Strict parsing of genotype format prefix
(edit) @528   3 years Maciej Komosinski - Part.m removed - Part.h becomes XPROP - validate more part and joint …
(edit) @522   3 years Maciej Komosinski Code formatting
(edit) @521   3 years Maciej Komosinski Extended error messages for invalid genotype format declaration
(edit) @518   3 years Maciej Komosinski More strict parsing of genotype format prefix
(edit) @516   3 years Maciej Komosinski Geno format as a string (no longer ascii number)
(edit) @514   4 years Maciej Komosinski More strict parsing of numbers when converting genotypes f1->f0
(edit) @513   4 years Maciej Komosinski checkValidity() and validate() are now aware of genotype name
(edit) @508   4 years Maciej Komosinski Conditional macro to identify for which genotypes the order of …
(edit) @500   4 years Maciej Komosinski Fixed uninit - previously cached f0 might have been treated as invalid
(edit) @494   4 years Maciej Komosinski Empty destructor no longer needed since it is present in the base …
(edit) @492   4 years Maciej Komosinski emscripten compatibility
(edit) @483   4 years Maciej Komosinski Unified DEBUG macro ( -> _DEBUG )
(edit) @467   4 years Maciej Komosinski GenMan? interface uses STL std::string instead of SString
(edit) @452   4 years Maciej Komosinski Validation of genotypes additionally prints genotype name when there …
(edit) @408   4 years Maciej Komosinski Typos
(edit) @391   5 years sz Moved frams/loggers to common/loggers
(edit) @375   5 years Maciej Komosinski Renamed logging functions to more intuitive and simple names
(edit) @372   5 years sz Renamed some classes and functions to make their purpose more obvious: …
(edit) @348   5 years Maciej Komosinski - explicit c_str() in SString instead of (const char*) cast - genetic …
(edit) @346   5 years Maciej Komosinski Each thread can use its own simulator's GenMan?
(edit) @344   5 years Maciej Komosinski Non-COW string compatibility (const char* is always invalid after …
(edit) @319   5 years Maciej Komosinski Fixed compilation warnings
(edit) @288   5 years Maciej Komosinski GDK->SDK, gdk_test.cpp -> genomanipulation.cpp
(edit) @287   5 years Maciej Komosinski GDK->SDK
(edit) @286   5 years Maciej Komosinski Updated headers
(edit) @280   5 years Maciej Komosinski Version 4.0
(edit) @275   5 years Maciej Komosinski Inheritance information during crossing over properly stored as a …
(edit) @271   5 years Maciej Komosinski Refreshed header comments
(edit) @259   5 years Maciej Komosinski Added support for genetic mapping in f9
(edit) @257   5 years Maciej Komosinski - added strmove(): strcpy() for overlapping strings - ExtObject?
(edit) @256   5 years Maciej Komosinski Chambers in Foraminifera now have the proper orientation in 3D; …
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