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Diff Rev Age Author Log Message
(edit) @779   5 years Maciej Komosinski Unified file names of all files involved in genetic conversions and …
(edit) @778   5 years Maciej Komosinski A few useful functions added for 2D operations
(edit) @777   5 years Maciej Komosinski Fixed a typo
(edit) @776   5 years Maciej Komosinski Removed extra checkpoint
(edit) @775   5 years Maciej Komosinski Added a note on "fn" encoding to README.txt
(edit) @774   5 years Maciej Komosinski Removed unused "state" field (issue number 19), improved docs (issues …
(edit) @773   5 years Maciej Komosinski Improved styling implementation, fixes issue number 18 [refs #62]
(edit) @772   5 years Maciej Komosinski Unified #define modifiers in f1 and f4, fixes issue number 16 [refs #62]
(edit) @771   5 years Maciej Komosinski Added color and size modifiers in f4; avoided unnecessary conditions …
(edit) @770   5 years Maciej Komosinski Avoided "min" and "max" as variable names, fixes issue 22 [refs #62]
(edit) @769   5 years sz updated for Framsticks version 5.0rc13 (Model checkpoints, f4 …
(edit) @768   5 years Maciej Komosinski Reverted to 100x repeat-until-valid-mutation, required due to how …
(edit) @767   5 years Maciej Komosinski More strict parsing of the repetition counter; bug fixes; improved …
(edit) @766   5 years Maciej Komosinski Added a number of useful methods in 2D
(edit) @765   6 years Maciej Komosinski Wider ranges of allowed values for mutation when only partial …
(edit) @764   6 years Maciej Komosinski Less deterministic (less absorbing) mutation for very narrow allowed …
(edit) @763   6 years Maciej Komosinski Higher precision when storing variable values
(edit) @762   6 years Maciej Komosinski Default sample values for a 2D problem, not 1D; added documentation …
(edit) @761   6 years Maciej Komosinski Introduced a macro for the number of times GenMan? tries to repeat a …
(edit) @760   6 years Maciej Komosinski - added support for new API for neuron types and their properties - …
(edit) @759   6 years Maciej Komosinski f1 and f4 stick properties unified and moved to a separate structure …
(edit) @758   6 years Maciej Komosinski Added a few useful functions providing lists of neurons with specific …
(edit) @757   6 years Maciej Komosinski Removed appending the original fn genotype as a comment in the …
(edit) @756   6 years Maciej Komosinski Added frams/genetics/fn to ALL_DIRS so make clean cleans all dirs
(edit) @755   6 years Maciej Komosinski Renamed ParamTree::Node -> ParamTree::ParamTreeNode? to avoid name …
(edit) @754   6 years Maciej Komosinski More strict rules for Param type descriptions and "unlimited range …
(edit) @753   6 years Maciej Komosinski Improved Vector and Dictionary deserialization: any number of spaces …
(edit) @752   6 years Maciej Komosinski Mutation in the 'fn' encoding respects custom min,max,stddev for each …
(edit) @751   6 years Maciej Komosinski More versatile mutation function for numbers
(edit) @750   6 years Maciej Komosinski More proper definition of the crossover parameter
(edit) @749   6 years Maciej Komosinski Added a new function to linearly mix two vectors of real numbers
(edit) @748   6 years Maciej Komosinski Configured and activated the new "fn" genetic representation
(edit) @747   6 years Maciej Komosinski Added a new "fn" genetic representation (a vector of real numbers for …
(edit) @746   6 years Maciej Komosinski Code formatting
(edit) @745   6 years Maciej Komosinski Renamed ParamInterface::save() -> saveMultiLine()
(edit) @744   6 years Maciej Komosinski ParamTree? constructor changed (to make it easier for javascript) to …
(edit) @743   6 years Maciej Komosinski Introduced different function names in C++ instead of overloading …
(edit) @742   6 years Maciej Komosinski Code formatting
(edit) @741   6 years Maciej Komosinski Added just for inspiration/as an example of implementation; now these …
(edit) @740   6 years Maciej Komosinski Added support for developmental phases ("checkpoints") to converters …
(edit) @739   6 years Maciej Komosinski Unlimited number of model Parts/Joints/Neurons? when displaying the …
(edit) @738   6 years Maciej Komosinski Fixed comment location in source
(edit) @737   6 years Maciej Komosinski Made destructors virtual to avoid compiler warnings
(edit) @736   6 years Maciej Komosinski Added the new "using_checkpoints" argument to genetic converters so …
(edit) @735   6 years Maciej Komosinski Base genotype converter is now abstract, which triggers compilation …
(edit) @734   6 years Maciej Komosinski SString -> std::string
(edit) @733   6 years Maciej Komosinski Code formatting
(edit) @732   6 years Maciej Komosinski Added support for "checkpoints" (intermediate phases of development of …
(edit) @731   6 years Maciej Komosinski Code formatting
(edit) @730   6 years Maciej Komosinski Added/updated comments
(edit) @729   6 years Maciej Komosinski mutableparam_test added: demonstrates usage of ParamTransaction? and …
(edit) @728   6 years Maciej Komosinski Cosmetic
(edit) @727   6 years Maciej Komosinski The sample 'y' format converter returns f0 genotype now instead of …
(edit) @726   6 years Maciej Komosinski - Changed Model::singleStepBuild() to Model::addFromString() to create …
(edit) @725   6 years Maciej Komosinski Fix crash when no data provided
(edit) @724   6 years Maciej Komosinski Two sample programs demonstrating usage of param tree
(edit) @723   6 years Maciej Komosinski Building parameter tree based on names of parameter groups defined in …
(edit) @722   6 years Maciej Komosinski Added source for Model VM object
(edit) @721   6 years Maciej Komosinski Code formatting
(edit) @720   6 years Maciej Komosinski Param::save2() renamed to saveSingleLine(); unified Param::load() so …
(edit) @719   6 years Maciej Komosinski f1->f0 mapping maps ',' and ')' symbols to the branching Part (earlier …
(edit) @718   6 years Maciej Komosinski Fixed order of constructor calls
(edit) @717   6 years sz Framsticks 5.0rc12 update
(edit) @716   6 years Maciej Komosinski The f1 converter is now able to map more than one genotype character …
(edit) @715   6 years Maciej Komosinski GenMan?'s constructor now calls its setDefaults() to initialize all …
(edit) @714   6 years Maciej Komosinski - Setting default NeuroClass? active/genactive in preconfigured …
(edit) @713   6 years Maciej Komosinski Made error message more specific
(edit) @712   6 years Maciej Komosinski Improved status and error messages
(edit) @711   6 years konrad Logs without [BORN] entries (only [OFFSPRING]) should load properly now
(edit) @710   6 years konrad Added multi-input-file support (eg. ./tree-genealogy.py -i file1.out …
(edit) @709   6 years konrad tree-genealogy.py should now work correctly with the order of events …
(edit) @708   6 years Maciej Komosinski Improved diagnostic message
(edit) @707   6 years konrad Added a warning message about merging nodes with a virtual parent node.
(edit) @706   6 years konrad No more svn ignore on mds-and-trees
(edit) @705   6 years konrad Added an example of configuration file with colormaps
(edit) @704   6 years Maciej Komosinski ParamInterface::getText() improved: removed pointless iteration when …
(edit) @703   6 years Maciej Komosinski The "ex" macro renamed to "expdef" since 5.0rc12
(edit) @702   6 years konrad Non-normalized step values for cmap can now extend outside the range …
(edit) @701   6 years konrad Fixed a bug that could occur for trees with a lot of crossover …
(edit) @700   6 years konrad Colors support matplotlib cmaps now. 'color' property in config file …
(edit) @699   6 years sz updated for the Framsticks release v5.0rc11 (mostly documentation …
(edit) @698   6 years Maciej Komosinski Explicit cast to signed integer before applying negation, this is a …
(edit) @697   6 years Maciej Komosinski More legible and consistent notation of ranges
(edit) @696   6 years konrad Changes to formating of min/max values of properties
(edit) @695   6 years konrad Using matplotlib's color package to interpret colors. Color can be now …
(edit) @694   6 years konrad Some improvements in behavior for big trees
(edit) @693   6 years sz Updated for the most recent Framsticks release v5.0rc10
(edit) @692   6 years Maciej Komosinski Updated version IDs
(edit) @691   6 years Maciej Komosinski Support for reading/parsing and writing 64-bit integer values
(edit) @690   6 years konrad Better (but not ideal) behavior for very big trees
(edit) @689   6 years Maciej Komosinski More informative message
(edit) @688   6 years Maciej Komosinski More informative message
(edit) @687   6 years konrad Using "inherited' to decide horizontal distance from the parent
(edit) @686   6 years Maciej Komosinski Made loop iteration variable implicit ("enumerate")
(edit) @685   6 years Maciej Komosinski Displays progress as convenient percentage
(edit) @684   6 years Maciej Komosinski Minor optimization
(edit) @683   6 years Maciej Komosinski Slightly more helpful error message
(edit) @682   6 years konrad Broken last lines in input logs will not crash the script anymore (the …
(edit) @681   6 years konrad Improved the compute_depth function so now it works much faster for …
(edit) @680   6 years konrad Fixed the "ValueError?: max() arg is an empty sequence" error occurring …
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