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Diff Rev Age Author Log Message
(edit) @758   6 years Maciej Komosinski Added a few useful functions providing lists of neurons with specific …
(edit) @757   6 years Maciej Komosinski Removed appending the original fn genotype as a comment in the …
(edit) @756   6 years Maciej Komosinski Added frams/genetics/fn to ALL_DIRS so make clean cleans all dirs
(edit) @755   6 years Maciej Komosinski Renamed ParamTree::Node -> ParamTree::ParamTreeNode? to avoid name …
(edit) @754   6 years Maciej Komosinski More strict rules for Param type descriptions and "unlimited range …
(edit) @753   6 years Maciej Komosinski Improved Vector and Dictionary deserialization: any number of spaces …
(edit) @752   6 years Maciej Komosinski Mutation in the 'fn' encoding respects custom min,max,stddev for each …
(edit) @751   6 years Maciej Komosinski More versatile mutation function for numbers
(edit) @750   6 years Maciej Komosinski More proper definition of the crossover parameter
(edit) @749   6 years Maciej Komosinski Added a new function to linearly mix two vectors of real numbers
(edit) @748   6 years Maciej Komosinski Configured and activated the new "fn" genetic representation
(edit) @747   6 years Maciej Komosinski Added a new "fn" genetic representation (a vector of real numbers for …
(edit) @746   6 years Maciej Komosinski Code formatting
(edit) @745   6 years Maciej Komosinski Renamed ParamInterface::save() -> saveMultiLine()
(edit) @744   6 years Maciej Komosinski ParamTree? constructor changed (to make it easier for javascript) to …
(edit) @743   6 years Maciej Komosinski Introduced different function names in C++ instead of overloading …
(edit) @742   6 years Maciej Komosinski Code formatting
(edit) @741   6 years Maciej Komosinski Added just for inspiration/as an example of implementation; now these …
(edit) @740   6 years Maciej Komosinski Added support for developmental phases ("checkpoints") to converters …
(edit) @739   6 years Maciej Komosinski Unlimited number of model Parts/Joints/Neurons? when displaying the …
(edit) @738   6 years Maciej Komosinski Fixed comment location in source
(edit) @737   6 years Maciej Komosinski Made destructors virtual to avoid compiler warnings
(edit) @736   6 years Maciej Komosinski Added the new "using_checkpoints" argument to genetic converters so …
(edit) @735   6 years Maciej Komosinski Base genotype converter is now abstract, which triggers compilation …
(edit) @734   6 years Maciej Komosinski SString -> std::string
(edit) @733   6 years Maciej Komosinski Code formatting
(edit) @732   6 years Maciej Komosinski Added support for "checkpoints" (intermediate phases of development of …
(edit) @731   6 years Maciej Komosinski Code formatting
(edit) @730   6 years Maciej Komosinski Added/updated comments
(edit) @729   6 years Maciej Komosinski mutableparam_test added: demonstrates usage of ParamTransaction? and …
(edit) @728   6 years Maciej Komosinski Cosmetic
(edit) @727   6 years Maciej Komosinski The sample 'y' format converter returns f0 genotype now instead of …
(edit) @726   6 years Maciej Komosinski - Changed Model::singleStepBuild() to Model::addFromString() to create …
(edit) @725   6 years Maciej Komosinski Fix crash when no data provided
(edit) @724   6 years Maciej Komosinski Two sample programs demonstrating usage of param tree
(edit) @723   6 years Maciej Komosinski Building parameter tree based on names of parameter groups defined in …
(edit) @722   6 years Maciej Komosinski Added source for Model VM object
(edit) @721   6 years Maciej Komosinski Code formatting
(edit) @720   6 years Maciej Komosinski Param::save2() renamed to saveSingleLine(); unified Param::load() so …
(edit) @719   6 years Maciej Komosinski f1->f0 mapping maps ',' and ')' symbols to the branching Part (earlier …
(edit) @718   6 years Maciej Komosinski Fixed order of constructor calls
(edit) @717   7 years sz Framsticks 5.0rc12 update
(edit) @716   7 years Maciej Komosinski The f1 converter is now able to map more than one genotype character …
(edit) @715   7 years Maciej Komosinski GenMan?'s constructor now calls its setDefaults() to initialize all …
(edit) @714   7 years Maciej Komosinski - Setting default NeuroClass? active/genactive in preconfigured …
(edit) @713   7 years Maciej Komosinski Made error message more specific
(edit) @712   7 years Maciej Komosinski Improved status and error messages
(edit) @711   7 years konrad Logs without [BORN] entries (only [OFFSPRING]) should load properly now
(edit) @710   7 years konrad Added multi-input-file support (eg. ./tree-genealogy.py -i file1.out …
(edit) @709   7 years konrad tree-genealogy.py should now work correctly with the order of events …
(edit) @708   7 years Maciej Komosinski Improved diagnostic message
(edit) @707   7 years konrad Added a warning message about merging nodes with a virtual parent node.
(edit) @706   7 years konrad No more svn ignore on mds-and-trees
(edit) @705   7 years konrad Added an example of configuration file with colormaps
(edit) @704   7 years Maciej Komosinski ParamInterface::getText() improved: removed pointless iteration when …
(edit) @703   7 years Maciej Komosinski The "ex" macro renamed to "expdef" since 5.0rc12
(edit) @702   7 years konrad Non-normalized step values for cmap can now extend outside the range …
(edit) @701   7 years konrad Fixed a bug that could occur for trees with a lot of crossover …
(edit) @700   7 years konrad Colors support matplotlib cmaps now. 'color' property in config file …
(edit) @699   7 years sz updated for the Framsticks release v5.0rc11 (mostly documentation …
(edit) @698   7 years Maciej Komosinski Explicit cast to signed integer before applying negation, this is a …
(edit) @697   7 years Maciej Komosinski More legible and consistent notation of ranges
(edit) @696   7 years konrad Changes to formating of min/max values of properties
(edit) @695   7 years konrad Using matplotlib's color package to interpret colors. Color can be now …
(edit) @694   7 years konrad Some improvements in behavior for big trees
(edit) @693   7 years sz Updated for the most recent Framsticks release v5.0rc10
(edit) @692   7 years Maciej Komosinski Updated version IDs
(edit) @691   7 years Maciej Komosinski Support for reading/parsing and writing 64-bit integer values
(edit) @690   7 years konrad Better (but not ideal) behavior for very big trees
(edit) @689   7 years Maciej Komosinski More informative message
(edit) @688   7 years Maciej Komosinski More informative message
(edit) @687   7 years konrad Using "inherited' to decide horizontal distance from the parent
(edit) @686   7 years Maciej Komosinski Made loop iteration variable implicit ("enumerate")
(edit) @685   7 years Maciej Komosinski Displays progress as convenient percentage
(edit) @684   7 years Maciej Komosinski Minor optimization
(edit) @683   7 years Maciej Komosinski Slightly more helpful error message
(edit) @682   7 years konrad Broken last lines in input logs will not crash the script anymore (the …
(edit) @681   7 years konrad Improved the compute_depth function so now it works much faster for …
(edit) @680   7 years konrad Fixed the "ValueError?: max() arg is an empty sequence" error occurring …
(edit) @679   7 years konrad compute_adepth no longer uses recursion (so it should work better …
(edit) @678   7 years konrad Fixed a bug attempting to normalize a list of lists
(edit) @677   7 years konrad Fixed a bug with an incorrect order of assigning placement to nodes
(edit) @676   7 years Maciej Komosinski Improved comments, removed unnecessary TODO regarding "Rr" modifiers
(edit) @675   7 years Maciej Komosinski Code formatting
(edit) @674   7 years Maciej Komosinski f4 modifiers implemented similarly to f1 modifiers, and a base for …
(edit) @673   7 years Maciej Komosinski Added three functions that may be useful in general
(edit) @672   7 years Maciej Komosinski More appropriate name for the "model_energy_max" variable
(edit) @671   7 years Maciej Komosinski Unified property names of f1 and f4; improved docs; 3.141 -> M_PI
(edit) @670   7 years Maciej Komosinski Improved variable names and docs
(edit) @669   7 years Maciej Komosinski As default foraminifera initial chamber radius in Framsticks units …
(edit) @668   7 years Maciej Komosinski Fixed argument type in GenMan?.getSimplest()
(edit) @667   7 years Maciej Komosinski - fF foraminifera encoding supports scaling (radius) of the initial …
(edit) @666   7 years Maciej Komosinski Added missing #include
(edit) @665   7 years Maciej Komosinski Cosmetic
(edit) @664   7 years Maciej Komosinski Mark last Part white - a visual aid for easier editing of f9 genotypes
(edit) @663   7 years sz Updated for the upcoming Framsticks v5.0rc9
(edit) @662   7 years Maciej Komosinski - Ensure solid shapes (SolidsShapeTypeModel?) are used in geometry …
(edit) @661   7 years Maciej Komosinski FramScript?'s ModelGeometr? converts and caches the input model so …
(edit) @660   7 years Maciej Komosinski Model shape conversion no longer requires const Model&
(edit) @659   7 years Maciej Komosinski Detecting more unwanted flags in Param sanity check
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