source: java/main/src/main/java/com/framsticks/examples/GenotypeBrowser.java @ 79

package com.framsticks.examples;

import com.framsticks.core.Instance;
import com.framsticks.core.Node;
import com.framsticks.core.Parameters;
import com.framsticks.core.Path;
import com.framsticks.model.*;
import com.framsticks.model.Package;
import com.framsticks.params.*;
import com.framsticks.params.types.CompositeParam;
import com.framsticks.parsers.F0Parser;
import com.framsticks.parsers.Schema;
import org.apache.log4j.Logger;

import java.util.List;

/**
 * Author: Piotr Śniegowski
 */
public class GenotypeBrowser extends Instance {

        private static final Logger LOGGER = Logger.getLogger(Instance.class.getName());
        protected Schema schema;


        public GenotypeBrowser(Parameters parameters) {
                super(parameters);
                LOGGER.info("model builder created");
        }

        @Override
        protected void configure() throws Exception {
                super.configure();
                schema = new Schema(Schema.getDefaultDefinitionAsStream());
                this.registry = schema.getRegistry();
                Package.register(this.getRegistry());

                registry.putInfoIntoCache(new FramsClass("ModelBuilderRoot", "ModelBuilderRoot", null)
                                .append(new ParamBuilder().setType("o Model").setId("model").setName("model").build())
                );
                root = new Node((CompositeParam)new ParamBuilder().setType("o ModelBuilderRoot").setId(name).setName("Instance").build(), PropertiesAccess.createPropertiesMap());
        }

        @Override
        protected void run() {
                assert isActive();

                try {
                        List<AccessInterface> accesses = new F0Parser(schema, GenotypeBrowser.class.getResourceAsStream("/examples/f0_example.txt")).parse();
                        List<Object> objects = Util.stripAccessInterface(accesses);
                        Model model = Model.build(objects);

                        AccessInterface rootAccess = bindAccess(new Path(this, "/"));

                        rootAccess.set("model", model);

                } catch (Exception e) {
                        LOGGER.error("exception caught: " + e);
                }
                //done();
        }

}