<?xml version="1.0" encoding="UTF-8"?><xml><records><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Maciej Komosinski</style></author><author><style face="normal" font="default" size="100%">Agnieszka Mensfelt</style></author><author><style face="normal" font="default" size="100%">Jarosław Tyszka</style></author><author><style face="normal" font="default" size="100%">Jan Goleń</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Multi-agent simulation of benthic foraminifera response to annual variability of feeding fluxes</style></title><secondary-title><style face="normal" font="default" size="100%">Journal of Computational Science</style></secondary-title></titles><dates><year><style  face="normal" font="default" size="100%">2017</style></year></dates><urls><web-urls><url><style face="normal" font="default" size="100%">http://www.framsticks.com/files/common/SimulationForaminiferaFeedingFluxes.pdf</style></url></web-urls></urls><volume><style face="normal" font="default" size="100%">21</style></volume><pages><style face="normal" font="default" size="100%">419–431</style></pages><abstract><style face="normal" font="default" size="100%">In this work we describe a novel simulation model of foraminifera and their microhabitat. The simulations reported here are focused on the response of foraminiferal populations to environmental feeding fluxes. The experiments allowed to calibrate the model and to simulate realistic population patterns known from culture experiments, as well as from oceanographic and paleoecologic studies. Variability of annual food flux has a direct impact on productivity of foraminifera: population sizes closely follow the intensity of constant and seasonal food fluxes in both scenarios. This correlation between the food influx and population size is interpreted as the consequence of changing the carrying capacity of the system. Seasonal pulses of particulate organic matter enhance the population size which is represented by a higher number of fossilized shells. Our model offers a flexible experimental design to run sophisticated in silico experiments. This approach reveals a novel methodology for testing sensitivity of fossil and recent foraminiferal assemblages to environmental changes. Furthermore, it facilitates predictive applications for monitoring studies based on simulation of various scenarios.</style></abstract></record><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>5</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Maciej Komosinski</style></author><author><style face="normal" font="default" size="100%">Agnieszka Mensfelt</style></author><author><style face="normal" font="default" size="100%">Topa, Paweł</style></author><author><style face="normal" font="default" size="100%">Jarosław Tyszka</style></author></authors><secondary-authors><author><style face="normal" font="default" size="100%">Gruca, Aleksandra</style></author><author><style face="normal" font="default" size="100%">Brachman, Agnieszka</style></author><author><style face="normal" font="default" size="100%">Kozielski, Stanisław</style></author><author><style face="normal" font="default" size="100%">Czachórski, Tadeusz</style></author></secondary-authors></contributors><titles><title><style face="normal" font="default" size="100%">Application of a morphological similarity measure to the analysis of shell morphogenesis in Foraminifera</style></title><secondary-title><style face="normal" font="default" size="100%">Man–Machine Interactions 4</style></secondary-title><tertiary-title><style face="normal" font="default" size="100%">Advances in Intelligent Systems and Computing</style></tertiary-title></titles><dates><year><style  face="normal" font="default" size="100%">2016</style></year></dates><urls><web-urls><url><style face="normal" font="default" size="100%">http://www.framsticks.com/files/common/ForaminiferaGenotypePhenotypeMapping.pdf</style></url></web-urls></urls><publisher><style face="normal" font="default" size="100%">Springer</style></publisher><volume><style face="normal" font="default" size="100%">391</style></volume><pages><style face="normal" font="default" size="100%">215–224</style></pages><isbn><style face="normal" font="default" size="100%">978-3-319-23436-6</style></isbn><abstract><style face="normal" font="default" size="100%">This work evaluates the genotype-to-phenotype mapping defined by one of the models of growth of foraminifera. Foraminifera are simple unicellular organisms with very diverse morphologies. To analyze the mapping, a morphological similarity measure is needed that compares 3D structures. One of the key components of the similarity estimation algorithm is Singular Value Decomposition (SVD). Since this algorithm is heavily used and its performance is important, four SVD implementations have been compared in this work. Distance matrices of the phenotypes obtained for equally distant genotypes were computed using the similarity measure. For the visualization of the phenotype space, multidimensional scaling techniques were used. Visual comparison of the genotype and the phenotype spaces revealed characteristics and potential weaknesses of the analyzed model of foraminifera growth, and demonstrated usefulness of the proposed approach.</style></abstract></record><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>5</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Paweł Topa</style></author><author><style face="normal" font="default" size="100%">Maciej Komosinski</style></author><author><style face="normal" font="default" size="100%">Maciej Bassara</style></author><author><style face="normal" font="default" size="100%">Jarosław Tyszka</style></author></authors><secondary-authors><author><style face="normal" font="default" size="100%">Gruca, Aleksandra</style></author><author><style face="normal" font="default" size="100%">Brachman, Agnieszka</style></author><author><style face="normal" font="default" size="100%">Kozielski, Stanisław</style></author><author><style face="normal" font="default" size="100%">Czachórski, Tadeusz</style></author></secondary-authors></contributors><titles><title><style face="normal" font="default" size="100%">eVolutus: a configurable platform designed for ecological and evolutionary experiments tested on Foraminifera</style></title><secondary-title><style face="normal" font="default" size="100%">Man–Machine Interactions 4</style></secondary-title></titles><dates><year><style  face="normal" font="default" size="100%">2016</style></year></dates><urls><web-urls><url><style face="normal" font="default" size="100%">http://dx.doi.org/10.1007/978-3-319-23437-3_23</style></url></web-urls></urls><publisher><style face="normal" font="default" size="100%">Springer</style></publisher><isbn><style face="normal" font="default" size="100%">978-3-319-23436-6</style></isbn><language><style face="normal" font="default" size="100%">eng</style></language></record><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>13</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Maciej Komosinski</style></author><author><style face="normal" font="default" size="100%">Agnieszka Mensfelt</style></author><author><style face="normal" font="default" size="100%">Topa, Paweł</style></author><author><style face="normal" font="default" size="100%">Jarosław Tyszka</style></author><author><style face="normal" font="default" size="100%">Szymon Ulatowski</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Foraminifera: genetics, morphology, simulation, evolution</style></title></titles><dates><year><style  face="normal" font="default" size="100%">2014</style></year></dates><urls><web-urls><url><style face="normal" font="default" size="100%">http://www.framsticks.com/foraminifera</style></url></web-urls></urls></record></records></xml>