Framsticks

Added an example of sampling a 3D Model using the ModelGeometry? class

Added a function to get voxels of sampled Model geometry from script

updated for Framsticks v5.0rc19:

• SimilMeasure?.simil_type
• min muscle power changed to 0

Follow-up to r1107

Avoided potentially dangerous subtraction from unsigned int

Unified names of neurons and neuron flags; muscle power range now starts from 0 instead of 0.01

Since 5.0rc19 there is no need to restore the current working directory because Framsticks does not change it

Using the "framsfiles" module to write genotypes to a file instead of an ad-hoc code

Added the "framsfiles" module for reading and writing Framsticks-format files (genotypes, settings, scrips, neurons, etc.)

Added an example of setting a different expdef (experiment definition)

Do not fail when the dissimilarity matrix is not symmetric, print a warning message instead

Import simulation settings only once in the beginning, not on every evaluation (so changes in parameter values will now persist forever)

Cosmetic / minor fixes

Minor fix.

Paramter controlling output printing added.

Calls to deprecated parameters changed.

restore the original working directory after frams.init()

Cosmetic

Same as r1091 but for evolution: allowed to override settings of the simulation using a file with the file name provided as an argument

Updated settings for version 5.0rc18: added new fields and removed old fields